PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_038430_ynft.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C2H2
Protein Properties Length: 372aa    MW: 42712.7 Da    PI: 6.4651
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_038430_ynft.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.0005279101323
                         ET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                         C+   Cgk+F +   L++H   H
  Bv2_038430_ynft.t1  79 CSydGCGKTFIDAGALRKHSHIH 101
                         78889**************7766 PP
2zf-C2H216.52.4e-05106130123
                         EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                         y+C+   Cgk F ++s LkrH   H
  Bv2_038430_ynft.t1 106 YVCHyeGCGKKFLDSSKLKRHFLIH 130
                         9********************8877 PP
3zf-C2H221.75.3e-07136160123
                         EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                         ++Cp   Cgk Fs   nL++H++tH
  Bv2_038430_ynft.t1 136 FVCPheGCGKAFSLDFNLRSHMKTH 160
                         89**********************9 PP
4zf-C2H217.89.4e-06166190123
                         EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                         + Cp  dCgk++ + + Lk+Hi +H
  Bv2_038430_ynft.t1 166 HICPypDCGKRYAHEYKLKNHIASH 190
                         679999*****************96 PP
5zf-C2H216.13.3e-05228253123
                         EEET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                         y+Cp   C+k + + + L+ H+r+ H
  Bv2_038430_ynft.t1 228 YTCPyeGCDKAYIHEYKLNLHLRReH 253
                         9**********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.3E-1372103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.002877101IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.78377106IPR007087Zinc finger, C2H2
PROSITE patternPS00028079101IPR007087Zinc finger, C2H2
SuperFamilySSF576672.16E-880130No hitNo description
Gene3DG3DSA:3.30.160.602.3E-14104126IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.921106135IPR007087Zinc finger, C2H2
SMARTSM003550.0024106130IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280108130IPR007087Zinc finger, C2H2
SuperFamilySSF576674.65E-14117169No hitNo description
Gene3DG3DSA:3.30.160.603.5E-20127160IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003553.1E-4136160IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.695136165IPR007087Zinc finger, C2H2
PROSITE patternPS000280138160IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.4E-9161192IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0028166190IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.494166195IPR007087Zinc finger, C2H2
PROSITE patternPS000280168191IPR007087Zinc finger, C2H2
SuperFamilySSF576671.05E-5222251No hitNo description
Gene3DG3DSA:3.30.160.601.0E-8223251IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0019228253IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.014228258IPR007087Zinc finger, C2H2
PROSITE patternPS000280230253IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MEIHMSQNLF DRRPIMKSKT PATKWVKEWV PQDVVATGGK CYLQKWITED ALKALKEKTK  60
EPEAPEPEPE PTTEVLFLCS YDGCGKTFID AGALRKHSHI HGERQYVCHY EGCGKKFLDS  120
SKLKRHFLIH TGERDFVCPH EGCGKAFSLD FNLRSHMKTH SQENYHICPY PDCGKRYAHE  180
YKLKNHIASH HEKNSAEVTK YIPPVEKPVK TPKPAAAGAY SASSDRPYTC PYEGCDKAYI  240
HEYKLNLHLR REHPGHYAEE APKTAQPNNV DNEMDEASDQ DAYVSKRSIA KNLKQSKPKP  300
NIKLPPSKMS QRKGSGVSPA QLNVVKKPWP IKEEVYEEED SEETEEDCDN GEDGWRYREN  360
NDDDDEETEY ED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C5e-35791908119PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010670022.10.0PREDICTED: uncharacterized zinc finger protein At4g06634 isoform X2
SwissprotQ2V3L31e-155YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A1Q3AZP20.0A0A1Q3AZP2_CEPFO; Zf-H2C2_2 domain-containing protein/zf-C2H2_4 domain-containing protein
STRINGXP_010670021.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-142C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]