PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_035870_qfwi.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ARF
Protein Properties Length: 1082aa    MW: 119553 Da    PI: 6.6483
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_035870_qfwi.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.91.4e-21132233199
                         EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++   W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   
  Bv2_035870_qfwi.t1 132 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHDTLWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI-- 219
                         99*****************************9445444.38************************************************.. PP

                         SSSEE..EEEEE-S CS
                  B3  86 grsefelvvkvfrk 99 
                         ++++++l+++++r+
  Bv2_035870_qfwi.t1 220 RDEKQHLLLGIRRA 233
                         5689999****997 PP
2Auxin_resp117.41.2e-38258341183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaa+++s+F+v+YnPras+seFv++++k+ ka++ ++vs+GmRf+m+fete+s +rr++Gt++g+sdld+vrW+ S+Wr+L+
  Bv2_035870_qfwi.t1 258 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVYgQQVSLGMRFRMMFETEESGTRRYMGTITGISDLDSVRWKSSQWRNLQ 341
                         79**********************************9*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-43123261IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-40124247IPR015300DNA-binding pseudobarrel domain
CDDcd100172.62E-18131232No hitNo description
PfamPF023621.1E-19132233IPR003340B3 DNA binding domain
PROSITE profilePS5086311.646132234IPR003340B3 DNA binding domain
SMARTSM010191.8E-21132234IPR003340B3 DNA binding domain
PfamPF065075.5E-34258341IPR010525Auxin response factor
PfamPF023093.6E-89661055IPR033389AUX/IAA domain
PROSITE profilePS5174525.4749701054IPR000270PB1 domain
SuperFamilySSF542771.08E-69841047No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1082 aa     Download sequence    Send to blast
MKTTVTSNSV SQPTNSPSEG EKKTINPELW QACAGPLVNL PAAGTHVVYF PQGHSEQVAA  60
SLKKDVDTQI PNYTNLPSKL LCLLHNVSLH ADPETDEVYA QMTLLPVPSF DKEALLRSDL  120
SLKAHKPQTE FFCKTLTASD TSTHGGFSVP RRAAEKIFPP LDFSMQPPAQ ELVARDLHDT  180
LWTFRHIYRG QPKRHLLTTG WSLFVSGKRL FAGDSVLFIR DEKQHLLLGI RRANRQPTNL  240
SSSVLSSDSM HIGILAAAAH AAANNSPFTV FYNPRASPSE FVIPLAKYYK AVYGQQVSLG  300
MRFRMMFETE ESGTRRYMGT ITGISDLDSV RWKSSQWRNL QVGWDESAAG ERRNRVSVWE  360
IEPVTAPFFI CPPPFLRPKR PRIPGMPDDD PDADNPFKRT MPWLGDDPNA LTGLNLMQWM  420
NMPQNSSLAN SMQANFLNTL PGSTAFQGLP GSDLSRQLGF TAPQIPQQNN SQYNAQRQVQ  480
SVQQLDQLQK SSGSSNPLNS LIQSQQQLCD VTQQPRQSLI NQTLTSSQVQ SQLLQSQGLV  540
QHQNSLQQSS PLQNHQFLGN LPLQQQQTSG SSQQQSLHQL QQVTDNQYQL HLLQRLQQQQ  600
QSLLTQQSAM QQTNQMNQLQ EPQRPLLDVS QSFSRSLPSS RMLDMPQVQM TSLPQSQITP  660
EQMIRSNSQT NLHFSQTPPI PKLSQQQSGV MPELQSQPGV ARNLMSNHPS TAASSSFTGA  720
AAGGQSALTD DIPSCSTSPS TNNDPNGPQT IMNSRSHRSF ALGEGINQPS ANLMSCNGLE  780
AMAAQNSFKE LHQKADVKPS VNITKVETQG HLTRQTYPNI PMDYLDTSSA NSASLSQNDM  840
LSQTNLLSNP QSSFLGDTVQ DLEVQADVRN NIHTGASING QLGASLVPDA MLTKNVPSSD  900
KKYSNNVSSG CMLSTYENSK DAQQELSSSM VTQSFGVPDV AFNSIDSAIS DSSFMNRGAW  960
APATQYQRLR TYTKVYKRGA VGRSIDVTRY SDYEELKQDL ARMFGIEGQM EDRGRVGWKL  1020
VYVDHENDVL LVGDDPWEDF VNCVRCVKIL SPQEVQQMSL DGDFGNASLH NQACSSSDGG  1080
NV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1662136247388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010669598.10.0PREDICTED: auxin response factor 19
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A0K9S0970.0A0A0K9S097_SPIOL; Auxin response factor
STRINGXP_010669598.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19