PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_032870_nige.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family NAC
Protein Properties Length: 393aa    MW: 44125 Da    PI: 8.3871
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_032870_nige.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.21.7e-49191451128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                         + pGfrF+Ptdeel+ +yLkkk+eg +  + e+i+evdi+k+ePwdLp k++ ++++ew+fFs+r kky++g++++rat+ gyWkatgk++
  Bv2_032870_nige.t1  19 MFPGFRFSPTDEELILYYLKKKLEGYDKCV-EIIPEVDICKYEPWDLPsKAIIKSDQEWFFFSPRGKKYPNGSQSKRATEIGYWKATGKER 108
                         579************************777.89***************767777899********************************** PP

                 NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +v+s + +++g+k+tLvf+ grapkge+t+W+mhey +
  Bv2_032870_nige.t1 109 AVKS-GLNAIGTKRTLVFHIGRAPKGERTEWIMHEYCV 145
                         ***9.999****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-5512161IPR003441NAC domain
PROSITE profilePS5100553.24719161IPR003441NAC domain
PfamPF023656.6E-2521144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0033619Biological Processmembrane protein proteolysis
GO:0048573Biological Processphotoperiodism, flowering
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MDGNVISKEA ESSIAASSMF PGFRFSPTDE ELILYYLKKK LEGYDKCVEI IPEVDICKYE  60
PWDLPSKAII KSDQEWFFFS PRGKKYPNGS QSKRATEIGY WKATGKERAV KSGLNAIGTK  120
RTLVFHIGRA PKGERTEWIM HEYCVSGKGQ DALVVCRLRR KNDYHAMNCT NGDFQLSDSL  180
ASSGTYLGCG IDPLTSTSRE DKMAECSFKK SSSSHDSHSV EQTDSPSQSD WKTKDEIDEA  240
RFVSPVNHAA NEDDLFAEIL NDSIIKLDEC LPSTPASTFG AQPSETNTTT VPIVPRTSDP  300
VHHPVTPRVS PSQGTANRRI RLRKLRRFSP RKEELEAGAR EYMVHSKSKQ LLGKGRNGWI  360
MLFKSCFRLY VVVITIVSVT LLLTYATAPN YCY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-4531621166NO APICAL MERISTEM PROTEIN
1ut4_B4e-4531621166NO APICAL MERISTEM PROTEIN
1ut7_A4e-4531621166NO APICAL MERISTEM PROTEIN
1ut7_B4e-4531621166NO APICAL MERISTEM PROTEIN
3swm_A5e-451816219169NAC domain-containing protein 19
3swm_B5e-451816219169NAC domain-containing protein 19
3swm_C5e-451816219169NAC domain-containing protein 19
3swm_D5e-451816219169NAC domain-containing protein 19
3swp_A5e-451816219169NAC domain-containing protein 19
3swp_B5e-451816219169NAC domain-containing protein 19
3swp_C5e-451816219169NAC domain-containing protein 19
3swp_D5e-451816219169NAC domain-containing protein 19
4dul_A4e-4531621166NAC domain-containing protein 19
4dul_B4e-4531621166NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1317323RRIRLRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP), probably via metalloprotease activity. Regulates gibberellic acid-mediated salt-responsive repression of seed germination and flowering via FT, thus delaying seed germination under high salinity conditions. {ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00280DAPTransfer from AT2G27300Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high salt stress (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Repressed by gibberellic acid (GA), but induced by the GA biosynthetic inhibitor paclabutrazol (PAC) (PubMed:18363782). Accumulates transiently in seeds upon imbibition (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Induced by drought stress (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010668790.10.0PREDICTED: NAC domain-containing protein 40 isoform X1
RefseqXP_010668797.10.0PREDICTED: NAC domain-containing protein 40 isoform X1
SwissprotQ9XIN72e-85NAC40_ARATH; NAC domain-containing protein 40
TrEMBLA0A0K9RI701e-175A0A0K9RI70_SPIOL; Uncharacterized protein
STRINGXP_010668790.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.13e-71NTM1-like 8
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  2. Tian H, et al.
    NTL8 Regulates Trichome Formation in Arabidopsis by Directly Activating R3 MYB Genes TRY and TCL1.
    Plant Physiol., 2017. 174(4): p. 2363-2375
    [PMID:28649093]