PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Bv2_031250_jcne.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

C2H2

Protein Properties

Length: 76aa MW: 9052.23 Da PI: 9.4205

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv2_031250_jcne.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.7e-05	21	42	3	23
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C++C+k F++ L+ H + H Bv2_031250_jcne.t1 21 CNICSKEFKTANGLQFHVHSrH 42 *****************98877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.10.110.10	8.9E-4	14	72	IPR001781	Zinc finger, LIM-type
SuperFamily	SSF57667	3.13E-5	20	44	No hit	No description
PROSITE pattern	PS00028	0	21	42	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 76 aa Download sequence Send to blast
MSYLVRDDEE DRSDGTRKKI CNICSKEFKT ANGLQFHVHS RHNNYFLCPT CNLVDQNKNR 60 RQFHDSKICK MSRNKT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-