PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_031200_qerp.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ARR-B
Protein Properties Length: 588aa    MW: 65377.3 Da    PI: 6.6038
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_031200_qerp.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.92.3e-28203256155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         kpr++W+ eLH++Fv av+qL G +kA+Pk+ilelm+v+ Lt+e+v+SHLQkYRl
  Bv2_031200_qerp.t1 203 KPRVVWSVELHRKFVAAVNQL-GLDKAVPKKILELMNVDKLTRENVASHLQKYRL 256
                         79*******************.********************************8 PP
2Response_reg77.35.4e-26201281109
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                         vl vdD+p+ ++ll+++l+k +y +v++++++  al++l++++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+g+++++ + 
  Bv2_031200_qerp.t1  20 VLAVDDNPICLRLLETLLRKCQY-HVTTTSEAITALKMLRDNKnnFDLVISDVHMPDMDGFKLLEFVGL-EMDLPVIMLSANGDPKLVMKG 108
                         799********************.***************777777*******************98855.458****************** PP

                         HHTTESEEEESS--HHHHHH CS
        Response_reg  90 lkaGakdflsKpfdpeelvk 109
                         +  Ga d+l Kp+  eel +
  Bv2_031200_qerp.t1 109 ITHGACDYLLKPVRLEELKN 128
                         *****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363923.0E-1671583IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23002.5E-4217154No hitNo description
SuperFamilySSF521725.69E-3617142IPR011006CheY-like superfamily
SMARTSM004484.5E-3218130IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.52319134IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.3E-2320128IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.97E-2721133No hitNo description
Gene3DG3DSA:1.10.10.601.8E-30200261IPR009057Homeodomain-like
PROSITE profilePS5129412.407200259IPR017930Myb domain
SuperFamilySSF466894.84E-20201260IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-25203256IPR006447Myb domain, plants
PfamPF002491.4E-7205255IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MTVEQRNDES HDQFPVGMRV LAVDDNPICL RLLETLLRKC QYHVTTTSEA ITALKMLRDN  60
KNNFDLVISD VHMPDMDGFK LLEFVGLEMD LPVIMLSANG DPKLVMKGIT HGACDYLLKP  120
VRLEELKNIW QHVVRRKKFD SKDRNSSNSL DKNSSEGNGT RDANFDQDTK QCRKRKDQNG  180
DDDEDQDENE NDNENEDPSS QKKPRVVWSV ELHRKFVAAV NQLGLDKAVP KKILELMNVD  240
KLTRENVASH LQKYRLYLKR ISSVANQQAN MVAALGGADS PYLRMNPVNF HGFNGSPQFH  300
NNSLRSITPA GVLGRLNTPA GLGLHGLPPS GLVQLGQCQM QTSSINDSTK FQPTLLPGDH  360
NHTGTVLQGM PTSLEFDQLH KNSTTMLTGS SNSILSLPNS SLTMQGRSSQ ERQHLQGFGV  420
TSDPPPNLMD NSRCNSTWPA AVQSQSTSMN PMGNGVHDIS PNMSIPSRLQ NPSLMSENMM  480
QNMSYVTKQA WDPDYLDSSV GNTQSGYDPR NTSSVLHRET NFNSIGQQRF DSLGPQHDPM  540
IRNSQVDMAI RLKQGEFMEQ GGRPSGNYNS GNAAGSLEDV VTAMFKHV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-25199262164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010665924.10.0PREDICTED: two-component response regulator ORR24 isoform X1
SwissprotA2X1N21e-144ORR24_ORYSI; Two-component response regulator ORR24
TrEMBLA0A0K9QPN00.0A0A0K9QPN0_SPIOL; Two-component response regulator
STRINGXP_010665924.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-130response regulator 12