PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Bv2_031180_wtsp.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

C2H2

Protein Properties

Length: 278aa MW: 30386.5 Da PI: 6.6079

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv2_031180_wtsp.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00022	107	129	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Bv2_031180_wtsp.t1 107 FSCNYCQRKFYSSQALGGHQNAH 129 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.94E-6	104	134	No hit	No description
PROSITE profile	PS50157	11.427	107	134	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	109	129	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MEQIELEPCL SGTSSTISAA QEVLPHTHLY RQLHQHHKAG KEAQLEDQDQ EQETVSQTQI 60 PLDFMISNED SCHEFNAELN LIDCLNVGSS QSSSETPQAS ESEPRVFSCN YCQRKFYSSQ 120 ALGGHQNAHK RERTIAKRNQ RIGATIAATA AAFGHPYLHQ QHNYSNIASL PLHGSSPNRS 180 LGIQVHSMAH KTPPNMTMSS SGNVYGHHGW LRLPIEQQPA VGKLVTETCT TAGPSSRGGA 240 GRFNIVDEGV TSGGWWSGDS TIKSNSEDST KLDLSLKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010665880.1	0.0	PREDICTED: zinc finger protein 3
TrEMBL	A0A0K9QCL9	1e-158	A0A0K9QCL9_SPIOL; Uncharacterized protein
STRING	XP_010665880.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	2e-49	C2H2 family protein