PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_028660_twpr.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family CO-like
Protein Properties Length: 367aa    MW: 40858.7 Da    PI: 5.3084
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_028660_twpr.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box201.4e-061656438
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                        r+C+++   + + +C+ ++ +lC +C   +H        H+
  Bv2_028660_twpr.t1 16 RVCDTCRAAPCTVYCRADSAFLCTSCDARIHAAnqvasrHE 56
                        79*****************************6556666666 PP
2zf-B_box32.81.4e-1058103342
            zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                          ++C+ +e+ ++ + C+ +   lC++C  e+H+       H++vp+
  Bv2_028660_twpr.t1  58 VWVCEACERAPAAFLCKADAASLCATCDAEIHSAnplarrHQRVPI 103
                         689*****************************66899999**9997 PP
3CCT70.73.7e-24298341144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         Rea+++RY+eK+k+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  Bv2_028660_twpr.t1 298 REARVMRYREKKKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 341
                         9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003366.7E-111360IPR000315B-box-type zinc finger
PROSITE profilePS5011910.6231360IPR000315B-box-type zinc finger
CDDcd000211.60E-81660No hitNo description
PROSITE profilePS5011911.44856103IPR000315B-box-type zinc finger
PfamPF006432.3E-857103IPR000315B-box-type zinc finger
CDDcd000213.54E-859103No hitNo description
SMARTSM003361.2E-1161103IPR000315B-box-type zinc finger
PROSITE profilePS5101716.747298340IPR010402CCT domain
PfamPF062033.5E-18298340IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MMKEEVSGSD TNSWARVCDT CRAAPCTVYC RADSAFLCTS CDARIHAANQ VASRHERVWV  60
CEACERAPAA FLCKADAASL CATCDAEIHS ANPLARRHQR VPIMPVAGCV YGPQGGRMSE  120
DRFLTLPEGD DHTTDHEGDE DEAASWLLLN PVKNSNNQNT NGFLTGGGEV DEYLDLLEYN  180
SGADNQLCEQ YNQQQEFKVP EKNCGGDSVV PVQCREAKDH QIQYQNFLFG MECETKSGYT  240
YNTSISQSVS VSSMDVGVVP ESAMSDISMS HPRPPKGTID LFSSPPMQVP TQLSPLDREA  300
RVMRYREKKK NRKFEKTIRY ASRKAYAETR PRIKGRFAKR TDVEAEMDQM FTNSLMADSG  360
YGIVPSY
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU4377820.0EU437782.1 Beta vulgaris subsp. vulgaris COL1 (COL1) gene, promotor and complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010694604.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 2
SwissprotQ965021e-140COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLB3TZZ70.0B3TZZ7_BETVU; COL1
STRINGXP_010694604.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.11e-129CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]