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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Bv2_028110_zsrh.t1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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| Family | M-type_MADS | ||||||||
| Protein Properties | Length: 109aa MW: 12566.5 Da PI: 8.9431 | ||||||||
| Description | M-type_MADS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | SRF-TF | 95.4 | 2.5e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+ rqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+ey+s
Bv2_028110_zsrh.t1 9 KRIENKISRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYAS 59
79***********************************************86 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SMART | SM00432 | 1.3E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 32.674 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 1.70E-41 | 2 | 81 | No hit | No description |
| SuperFamily | SSF55455 | 2.75E-34 | 2 | 89 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 3.1E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 9.0E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 3.1E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 3.1E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 109 aa Download sequence Send to blast |
MGRGKVELKR IENKISRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFST KGKLFEYAST 60 DSSSMERILE RYERYCYAER QLVATDSEGQ QEIVSHLLCH HCKLQQPFS |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1tqe_P | 2e-24 | 1 | 86 | 1 | 83 | Myocyte-specific enhancer factor 2B |
| 1tqe_Q | 2e-24 | 1 | 86 | 1 | 83 | Myocyte-specific enhancer factor 2B |
| 1tqe_R | 2e-24 | 1 | 86 | 1 | 83 | Myocyte-specific enhancer factor 2B |
| 1tqe_S | 2e-24 | 1 | 86 | 1 | 83 | Myocyte-specific enhancer factor 2B |
| 5f28_A | 3e-24 | 1 | 75 | 1 | 72 | MEF2C |
| 5f28_B | 3e-24 | 1 | 75 | 1 | 72 | MEF2C |
| 5f28_C | 3e-24 | 1 | 75 | 1 | 72 | MEF2C |
| 5f28_D | 3e-24 | 1 | 75 | 1 | 72 | MEF2C |
| 6byy_A | 3e-24 | 1 | 86 | 1 | 83 | MEF2 CHIMERA |
| 6byy_B | 3e-24 | 1 | 86 | 1 | 83 | MEF2 CHIMERA |
| 6byy_C | 3e-24 | 1 | 86 | 1 | 83 | MEF2 CHIMERA |
| 6byy_D | 3e-24 | 1 | 86 | 1 | 83 | MEF2 CHIMERA |
| 6c9l_A | 2e-24 | 1 | 86 | 1 | 83 | Myocyte-specific enhancer factor 2B |
| 6c9l_B | 2e-24 | 1 | 86 | 1 | 83 | Myocyte-specific enhancer factor 2B |
| 6c9l_C | 2e-24 | 1 | 86 | 1 | 83 | Myocyte-specific enhancer factor 2B |
| 6c9l_D | 2e-24 | 1 | 86 | 1 | 83 | Myocyte-specific enhancer factor 2B |
| 6c9l_E | 2e-24 | 1 | 86 | 1 | 83 | Myocyte-specific enhancer factor 2B |
| 6c9l_F | 2e-24 | 1 | 86 | 1 | 83 | Myocyte-specific enhancer factor 2B |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | KF727474 | 4e-49 | KF727474.1 Solanum melongena cultivar Zi Chang anthocyanin MADS transcription factor (MADS1) mRNA, complete cds. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_019103651.1 | 8e-72 | PREDICTED: truncated transcription factor CAULIFLOWER A-like | ||||
| Swissprot | D7SMN6 | 2e-47 | FULL_VITVI; Agamous-like MADS-box protein FUL-L | ||||
| TrEMBL | A0A0K9QLY8 | 3e-56 | A0A0K9QLY8_SPIOL; Uncharacterized protein | ||||
| STRING | XP_010666772.1 | 2e-56 | (Beta vulgaris) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G69120.1 | 3e-46 | MIKC_MADS family protein | ||||
| Publications ? help Back to Top | |||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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