 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Bv2_023500_uksi.t1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
|
| Family |
MYB |
| Protein Properties |
Length: 253aa MW: 27921.3 Da PI: 7.0118 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Bv2_023500_uksi.t1 | genome | TBVR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 58.9 | 1.1e-18 | 17 | 62 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
+g+WT++Ed l+++v q+G+++W++I++ ++ gR++k+c++rw +
Bv2_023500_uksi.t1 17 KGSWTPQEDATLIKLVDQHGPRNWTLISEGIP-GRSGKSCRLRWCNQ 62
799*****************************.***********985 PP
|
| 2 | Myb_DNA-binding | 55.4 | 1.4e-17 | 71 | 113 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
++++ Ede++++a+k +G++ W+ Ia+ ++ gRt++ +k++w++
Bv2_023500_uksi.t1 71 PFSPSEDEIIIQAHKAHGNR-WAVIAKLLP-GRTDNAIKNHWNST 113
79******************.*********.***********986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 253 aa
Download sequence Send
to blast |
MGTQNESQNG VVKDRVKGSW TPQEDATLIK LVDQHGPRNW TLISEGIPGR SGKSCRLRWC 60
NQLSPDVQHR PFSPSEDEII IQAHKAHGNR WAVIAKLLPG RTDNAIKNHW NSTLRRKRAH 120
EVGTELGEWK RQRVDSVSSE SNSGVGVVLE QEVDGGVEGS EGVETLLTLL PPGKSVIVPG 180
GGEREGEDQV MKGVGKGEEK SDHMIRCTVG RQDTCWINLM QSMIAEEVKN YMDRLVLNGD 240
GIGPKSDSQA HHK
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1gv2_A | 5e-40 | 16 | 117 | 3 | 104 | MYB PROTO-ONCOGENE PROTEIN |
| 1h88_C | 2e-39 | 4 | 117 | 45 | 158 | MYB PROTO-ONCOGENE PROTEIN |
| 1h89_C | 2e-39 | 4 | 117 | 45 | 158 | MYB PROTO-ONCOGENE PROTEIN |
| 1mse_C | 5e-40 | 16 | 117 | 3 | 104 | C-Myb DNA-Binding Domain |
| 1msf_C | 5e-40 | 16 | 117 | 3 | 104 | C-Myb DNA-Binding Domain |
| Search in ModeBase |
