PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Binding Motif |

Regulation |

Basic Information? help Back to Top

TF ID

Bv1_020990_cdhg.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

Nin-like

Protein Properties

Length: 914aa MW: 100956 Da PI: 6.3176

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv1_020990_cdhg.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.8	5.2e-29	597	648	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+le+l+++F++++kdAAk++gvc+T+LKriCRq+GIkRWP+Rkik++ Bv1_020990_cdhg.t1 597 AEKTITLEVLRQHFAGSLKDAAKSIGVCPTTLKRICRQHGIKRWPSRKIKKV 648 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.632	587	668	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-25	600	648	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.72E-24	811	902	No hit	No description
Gene3D	G3DSA:3.10.20.240	8.2E-23	816	897	No hit	No description
PROSITE profile	PS51745	25.538	817	900	IPR000270	PB1 domain
SMART	SM00666	3.3E-26	817	900	IPR000270	PB1 domain
Pfam	PF00564	4.4E-18	818	899	IPR000270	PB1 domain
CDD	cd06407	3.98E-41	818	898	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 914 aa Download sequence Send to blast
MDDAAFHSSV AFGVPSNSAM ELDYMDELLL EGCWLESVDG SNFFHQSPST SGAFFDSSYL 60 WPMLEVTNEK SSMNMSQKCG QQVRETSELA ENPVQVDTQL GNRVSMSNGQ SLVTIATDSD 120 QFDKFCAEGS ELNKLLWFKP KPASTVMERL LKALNYIKDS AKGNDLLVQI WVPVSRGGTR 180 ILTTVDQPFS VNSSGSQLAN YRNISMNYEF AAEENAAVSV GLPGRVFLGQ VPEWTPDVRF 240 FRIDEYPRVP YAQQCDVRGS LALPVFDQGS RNCLGVLEVV MTTQKVNYRP ELESVCRALE 300 AVDLRSCSEI PGPQKTKECC SSYQAALPEV LEVIKSACSS HGLPLAQTWV PCIQQGKEGC 360 RHSDENVSRC VSTVDSACFI ANPYMQEFYE ACSEHHLFRG QGVAGKAFMT NQPCFSADIT 420 TYSKTEYPLS HHARMFGLCA AVAIRLRCIY TGNADFVLEF FLPTDCRDPE EQKKMLTSLS 480 IIIQRVCRSL RVVSDKELEQ ETSMLSNNML KGENTVSNSS QEESCGTAFQ ERDRTSGLPV 540 PQDDQTRENF AGKLLSQHSP RANMKGSPGF SSLDCSAVGE GSFSTSGKSG DKKRAKAEKT 600 ITLEVLRQHF AGSLKDAAKS IGVCPTTLKR ICRQHGIKRW PSRKIKKVGH SLQKLQVVID 660 SVQGASGAFQ IGSFYSNFPD LASPNLSNTS PFSTPKQHDP PTQTSKELEG TATSKSPSSS 720 CSQSSSSSQC CSSGTQQQPS TWNGSGNEDP QVGPNSLEIC LKRARSEAEL IHTPSHEAGH 780 IISRSQSQKS LVEHHNNVDN RPPLPNCGVH VIQESDSLRV KVTYGEEKIR FRMLRSWEFK 840 DLVQEVVRRF NIGDMSGYQL KYLDDDSEWV LLTCDADLEE CVDISRSSQR QTIKLALQVS 900 QSHSRSSVAS NSHL

Sequence ? help Back to Top

Protein Sequence Length: 914 aa Download sequence Send to blast

MDDAAFHSSV AFGVPSNSAM ELDYMDELLL EGCWLESVDG SNFFHQSPST SGAFFDSSYL  60
WPMLEVTNEK SSMNMSQKCG QQVRETSELA ENPVQVDTQL GNRVSMSNGQ SLVTIATDSD  120
QFDKFCAEGS ELNKLLWFKP KPASTVMERL LKALNYIKDS AKGNDLLVQI WVPVSRGGTR  180
ILTTVDQPFS VNSSGSQLAN YRNISMNYEF AAEENAAVSV GLPGRVFLGQ VPEWTPDVRF  240
FRIDEYPRVP YAQQCDVRGS LALPVFDQGS RNCLGVLEVV MTTQKVNYRP ELESVCRALE  300
AVDLRSCSEI PGPQKTKECC SSYQAALPEV LEVIKSACSS HGLPLAQTWV PCIQQGKEGC  360
RHSDENVSRC VSTVDSACFI ANPYMQEFYE ACSEHHLFRG QGVAGKAFMT NQPCFSADIT  420
TYSKTEYPLS HHARMFGLCA AVAIRLRCIY TGNADFVLEF FLPTDCRDPE EQKKMLTSLS  480
IIIQRVCRSL RVVSDKELEQ ETSMLSNNML KGENTVSNSS QEESCGTAFQ ERDRTSGLPV  540
PQDDQTRENF AGKLLSQHSP RANMKGSPGF SSLDCSAVGE GSFSTSGKSG DKKRAKAEKT  600
ITLEVLRQHF AGSLKDAAKS IGVCPTTLKR ICRQHGIKRW PSRKIKKVGH SLQKLQVVID  660
SVQGASGAFQ IGSFYSNFPD LASPNLSNTS PFSTPKQHDP PTQTSKELEG TATSKSPSSS  720
CSQSSSSSQC CSSGTQQQPS TWNGSGNEDP QVGPNSLEIC LKRARSEAEL IHTPSHEAGH  780
IISRSQSQKS LVEHHNNVDN RPPLPNCGVH VIQESDSLRV KVTYGEEKIR FRMLRSWEFK  840
DLVQEVVRRF NIGDMSGYQL KYLDDDSEWV LLTCDADLEE CVDISRSSQR QTIKLALQVS  900
QSHSRSSVAS NSHL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00154	DAP	Transfer from AT1G20640	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010692542.1	0.0	PREDICTED: protein NLP4
Swissprot	Q9LE38	0.0	NLP4_ARATH; Protein NLP4
TrEMBL	A0A0K9S3Z8	0.0	A0A0K9S3Z8_SPIOL; Uncharacterized protein
STRING	XP_010692542.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein