PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_019700_yzuj.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family GRF
Protein Properties Length: 446aa    MW: 50831 Da    PI: 6.7068
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_019700_yzuj.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC70.22.6e-22184228145
                 WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                         d+epgrCrRtDGKkWRC + v++++k+C +H+hrg++rsrk +e+
  Bv1_019700_yzuj.t1 184 DPEPGRCRRTDGKKWRCHQSVIPNEKYCGKHMHRGSKRSRKLVEA 228
                         79****************************************997 PP
2WRC60.92e-19336375241
                 WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrk 41 
                         ++++rC+RtDGKkWRC+++vl+++k+C  H++rg+ r +k
  Bv1_019700_yzuj.t1 336 ETELRCKRTDGKKWRCKKEVLPDQKYCAQHINRGKVRLEK 375
                         5789******************************999776 PP
3QLQ42.61.9e-15113147337
                 QLQ   3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                         FT +Ql +Lk+Q l++Ky++ ++PvP +Ll++i++
  Bv1_019700_yzuj.t1 113 FTEEQLDELKRQFLIFKYMIWGLPVPLQLLLPIWR 147
                         9********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009518.8E-9111147IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166618.645112147IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.1E-11113146IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166722.709184228IPR014977WRC domain
PfamPF088791.0E-18185227IPR014977WRC domain
PROSITE profilePS5166719.486335384IPR014977WRC domain
PfamPF088795.6E-17337376IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MNLFSPSFST SSDFDQKSKD VKDRWKLNSE KQRKEEKTGE NEDESQPLIN LCLGIGDGGG  60
SSYFCSKKTD DREKDNNFDR IVMVEDEEEE EGEEEDDDDD QVVECRNYSV VRFTEEQLDE  120
LKRQFLIFKY MIWGLPVPLQ LLLPIWRSFS SSFVPHHLDN LYTRSSPFLL AFFREGSDYR  180
QVMDPEPGRC RRTDGKKWRC HQSVIPNEKY CGKHMHRGSK RSRKLVEASP NFRTPNFINL  240
NRNNNLSSDI RPHFPANLNK NGPTTVVMRA PAMTDKTAMS NDNDKQKNVS KHEIVAKEKT  300
VVINLASGLD FSPKSVLQND PSMPCPKIEN CKTNQETELR CKRTDGKKWR CKKEVLPDQK  360
YCAQHINRGK VRLEKPSLGS SSTPEPQAKV SLGLDTNLKI SLPTRPADGR NMIEDSVARN  420
GSSCSSSEAT ESDESADFSD IIVLSP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010692311.10.0PREDICTED: growth-regulating factor 9
TrEMBLA0A0K9S3W91e-138A0A0K9S3W9_SPIOL; Uncharacterized protein
STRINGXP_010692311.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36400.19e-27growth-regulating factor 3