PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_015270_jcra.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C2H2
Protein Properties Length: 275aa    MW: 29083.5 Da    PI: 8.6757
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_015270_jcra.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00064113135123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ykC+ Cgk F +   L  H  +H
  Bv1_015270_jcra.t1 113 YKCSVCGKAFGSYQALGGHKASH 135
                         9*********9999998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.2E-4113135IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.824113140IPR007087Zinc finger, C2H2
PfamPF139124.3E-13113137IPR007087Zinc finger, C2H2
SMARTSM003550.012113135IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.58E-10113187No hitNo description
PROSITE patternPS000280115135IPR007087Zinc finger, C2H2
PfamPF139124.8E-11164189IPR007087Zinc finger, C2H2
SMARTSM003551.8165187IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.058165187IPR007087Zinc finger, C2H2
PROSITE patternPS000280167187IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MALEALNSPT TPHAPFKLEE RSFDHWVKKK RSKRSRNEMS SPPSTTTATT DSPLSEEEYL  60
AFCLLMLAKG RSSGNSNNSS SINTNTAAAK PEIIIPTMIV PSEQQTRQVS LGYKCSVCGK  120
AFGSYQALGG HKASHRKPAA EDEKTSSAAT SSATTTTTSA GGKTHECSIC HKCFPTGQAL  180
GGHKRCHYEG SIGAAKSGGG TGSGVTASEG VGSTISLSHG GSSQRNFDLN LPALPEFLSV  240
DFFKIRGQSQ SMDEEVESPH PLKKPRLVLT GAAEY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010688220.10.0PREDICTED: zinc finger protein ZAT10
TrEMBLA0A0K9RUY31e-116A0A0K9RUY3_SPIOL; Uncharacterized protein
STRINGXP_010688220.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.12e-42salt tolerance zinc finger