PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv1_007680_jyqa.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 225aa MW: 25599.4 Da PI: 8.4786 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.6 | 5.9e-27 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +i+n + rqvtfskRr gi+KKAeELSvLCda++a+iifs tgkl+++s+ Bv1_007680_jyqa.t1 10 KIDNITARQVTFSKRRRGIFKKAEELSVLCDADIALIIFSATGKLFDFSN 59 69**********************************************85 PP | |||||||
2 | K-box | 40 | 1.6e-14 | 86 | 169 | 15 | 98 |
K-box 15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + + +lakL ke+ +e+R+l+GedL+ +l+eL +Le+ + +sl+++ ++K + ++ +ie+lqk+ + l een++Lr+k+ Bv1_007680_jyqa.t1 86 QLENSNLAKLSKEVADKSQELRKLKGEDLQGVDLEELLKLERLIGDSLSRVIDTKGKRIKHEIETLQKQGDILMEENQKLRRKM 169 555678999999999999****************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.623 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.8E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.07E-34 | 2 | 69 | No hit | No description |
PRINTS | PR00404 | 3.9E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.49E-29 | 3 | 78 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.6E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 11.908 | 85 | 175 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 9.2E-13 | 88 | 169 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MAREKIKIRK IDNITARQVT FSKRRRGIFK KAEELSVLCD ADIALIIFSA TGKLFDFSNC 60 RMKDILSRYT RQTKEEKQEE PFLELQLENS NLAKLSKEVA DKSQELRKLK GEDLQGVDLE 120 ELLKLERLIG DSLSRVIDTK GKRIKHEIET LQKQGDILME ENQKLRRKMI ALSQGRKPAI 180 LLDHSDTSTI HEQGQSSESI TNNGGPPLAE DDSSDTSLKL GLCLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 5e-18 | 1 | 70 | 1 | 70 | MEF2C |
5f28_B | 5e-18 | 1 | 70 | 1 | 70 | MEF2C |
5f28_C | 5e-18 | 1 | 70 | 1 | 70 | MEF2C |
5f28_D | 5e-18 | 1 | 70 | 1 | 70 | MEF2C |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 163 | 168 | KLRRKM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that inhibit floral transition in the autonomous flowering pathway, independent of photoperiod and temperature. Acts in a dosage-dependent manner. Together with AGL24 and AP1, controls the identity of the floral meristem and regulates expression of class B, C and E genes. Promotes EFM expression to suppress flowering (PubMed:25132385). {ECO:0000269|PubMed:16679456, ECO:0000269|PubMed:18694458, ECO:0000269|PubMed:19656343, ECO:0000269|PubMed:25132385}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the floral homeotic genes AP1 and SEP3 in emerging floral meristems. Up-regulated by HUA2. {ECO:0000269|PubMed:15659097, ECO:0000269|PubMed:17428825, ECO:0000269|PubMed:18694458}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FN356440 | 5e-41 | FN356440.1 Witheringia coccoloboides mRNA for MPF2-like (M201 gene), allele WIcoM201_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010675143.1 | 1e-161 | PREDICTED: MADS-box protein JOINTLESS | ||||
Swissprot | Q9FVC1 | 3e-78 | SVP_ARATH; MADS-box protein SVP | ||||
TrEMBL | A0A0K9QMI8 | 1e-105 | A0A0K9QMI8_SPIOL; Uncharacterized protein | ||||
STRING | XP_010675143.1 | 1e-160 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 1e-80 | MIKC_MADS family protein |