PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv1_004730_qnjn.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

BES1

Protein Properties

Length: 703aa MW: 78661.7 Da PI: 5.7934

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv1_004730_qnjn.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	134.6	1.1e-41	73	193	1	118
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpl.eeaeaagssas 87 g+++r+++ +E+E++k+RER+RRai+a+i+aGLR++G y+l++raD+n+V++AL+reAGwvv +DGtt++ +gs+p + + a Bv1_004730_qnjn.t1 73 GAARRSRPLEEKERTKLRERHRRAITARILAGLRRHGKYNLRVRADINDVIAALAREAGWVVLPDGTTFPsrsQGSRPSgNPSVPAA---M 160 5899*****************************************************************976677777742222222...2 PP DUF822 88 aspesslq..sslkssalaspvesysaspksss 118 sp ss+ ++++s +++ ++ y++s + ++ Bv1_004730_qnjn.t1 161 SSPASSQMlpQQTQSATFKGVCPGYQNSVEYNA 193 223332222246778888777777776655443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	2.8E-38	75	210	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	5.85E-174	258	698	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	1.7E-191	261	698	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	3.0E-99	267	684	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.4E-62	298	312	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.4E-62	319	337	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.4E-62	341	362	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.4E-62	434	456	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.4E-62	507	526	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.4E-62	541	557	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.4E-62	558	569	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.4E-62	576	599	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.4E-62	616	638	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0048831	Biological Process	regulation of shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 703 aa Download sequence Send to blast
MDVASSMHTT GTSEDDEEEE MDMDAKEEDD DDEGRNMAAS MMVNMVGGIS TSNNNNQFQY 60 NTEIQEQTTS QGGAARRSRP LEEKERTKLR ERHRRAITAR ILAGLRRHGK YNLRVRADIN 120 DVIAALAREA GWVVLPDGTT FPSRSQGSRP SGNPSVPAAM SSPASSQMLP QQTQSATFKG 180 VCPGYQNSVE YNACQIKGVF VPTASPYDVS SSSHSHASST VGSRGEGTDN HPLIGSSVDA 240 MGNKQVVELP SRLHEHDFAG TPYIPVYVML PLGVINMKCE LTNPAGLLKQ LRILKSINVD 300 GVMVDCWWGI VEAHAPQEYN WIGYKRLFQI VRDLKLKLQV MMSFHECGGN FCDDVCIPLP 360 LWVAEIGRSN PDIYFTDKEG RRNPECLSWG IDKERVLKGR TAYEVYFDFM RSFRIEFGEF 420 FEDGIISMVE VGLGPCGDLR YPSFPVKHGW RYPGLGEFQC YDQYMLKSLR KAAEARGHAF 480 WAKGPNNAGF YNSQPHETGF FCDGGEYDGY YGRFFLNWYS QVLVDHGDRI LSLAKLVFEG 540 TCIAAKLSGV HWWYKTASHA AEITAGFCNP CNRDGYAAVM SMLKKNGAAL NFTTAEVDML 600 DQLEVSPEAL ADPEGLAWQV LNAAWDVCIP VASENSVPCH SREVYNKILE NAKPFNDPDG 660 RHLLSFTYHR LSLQLMERHN LVEFERFVKK MHGEAVLDPQ SQM

Sequence ? help Back to Top

Protein Sequence Length: 703 aa Download sequence Send to blast

MDVASSMHTT GTSEDDEEEE MDMDAKEEDD DDEGRNMAAS MMVNMVGGIS TSNNNNQFQY  60
NTEIQEQTTS QGGAARRSRP LEEKERTKLR ERHRRAITAR ILAGLRRHGK YNLRVRADIN  120
DVIAALAREA GWVVLPDGTT FPSRSQGSRP SGNPSVPAAM SSPASSQMLP QQTQSATFKG  180
VCPGYQNSVE YNACQIKGVF VPTASPYDVS SSSHSHASST VGSRGEGTDN HPLIGSSVDA  240
MGNKQVVELP SRLHEHDFAG TPYIPVYVML PLGVINMKCE LTNPAGLLKQ LRILKSINVD  300
GVMVDCWWGI VEAHAPQEYN WIGYKRLFQI VRDLKLKLQV MMSFHECGGN FCDDVCIPLP  360
LWVAEIGRSN PDIYFTDKEG RRNPECLSWG IDKERVLKGR TAYEVYFDFM RSFRIEFGEF  420
FEDGIISMVE VGLGPCGDLR YPSFPVKHGW RYPGLGEFQC YDQYMLKSLR KAAEARGHAF  480
WAKGPNNAGF YNSQPHETGF FCDGGEYDGY YGRFFLNWYS QVLVDHGDRI LSLAKLVFEG  540
TCIAAKLSGV HWWYKTASHA AEITAGFCNP CNRDGYAAVM SMLKKNGAAL NFTTAEVDML  600
DQLEVSPEAL ADPEGLAWQV LNAAWDVCIP VASENSVPCH SREVYNKILE NAKPFNDPDG  660
RHLLSFTYHR LSLQLMERHN LVEFERFVKK MHGEAVLDPQ SQM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1b1y_A	1e-140	263	699	5	443	PROTEIN (BETA-AMYLASE)
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010670436.1	0.0	PREDICTED: beta-amylase 7 isoform X1
Swissprot	O80831	0.0	BAM7_ARATH; Beta-amylase 7
TrEMBL	A0A0K9RFM4	0.0	A0A0K9RFM4_SPIOL; Beta-amylase
STRING	XP_010670436.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45880.1	0.0	beta-amylase 7

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]