PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_002090_gcco.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 458aa    MW: 52248.5 Da    PI: 6.8451
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_002090_gcco.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH421.7e-13227278155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Bv1_002090_gcco.t1 227 QRMTHIAVERNRRRQMNEHLNALRSLMPPS---YVQRGDQASIIGGAIDFVKELE 278
                         79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.47E-12225282No hitNo description
PROSITE profilePS5088815.72226277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-17226294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-11227278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-14227290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-11232283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MEKLQGPINP CIIAEEFEVG WLEEFISNNG GNFKVEDPYY HNTTTEDTSY GDLHYSLPSL  60
EDKMPFLQML QSVEQQQQQH QQQQCHQLMH LEPNFQFLLK LQHQKLNFFP SPEIESCVTT  120
TTTTHNNNHN IDSNNHNNDM IIKNIMDNLQ CHHQGVKSEG EIHQQQQIIS SSGVVETLKC  180
KNSNSSSRSK KSATCCSTST VVVGLKEKRK RKRTTRPAKN KEEVETQRMT HIAVERNRRR  240
QMNEHLNALR SLMPPSYVQR GDQASIIGGA IDFVKELEQM LQSLQAQKRM RQYEENGDVS  300
ISSSSTSSSS NLHYNNIFMA SPSSSFHQLR NQFHSHEEGN GNGNGNGNSI DECMMMRKSN  360
NNEEYSAEKR SDLADIEVVV IQNHVNLKIQ CQRRAGQLLK AIVAFEELRL TVLHLNITSL  420
HALVHYSFNL KIEDDCRLGS ADEVARAVHQ IFSLINLS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227238RMTHIAVERNRR
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010688515.10.0PREDICTED: transcription factor bHLH67 isoform X1
SwissprotQ9M1282e-66BH057_ARATH; Transcription factor bHLH57
TrEMBLA0A0K9RJ711e-170A0A0K9RJ71_SPIOL; Uncharacterized protein
TrEMBLA0A0K9RKS41e-170A0A0K9RKS4_SPIOL; Uncharacterized protein
STRINGXP_010688515.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.12e-63bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]