PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv1_001950_ekgh.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | NAC | ||||||||
Protein Properties | Length: 388aa MW: 43544.7 Da PI: 5.175 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 100.4 | 2.6e-31 | 55 | 195 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.... 77 lp+G++F+P+d +l+ e+L++k+ + +++ +i++++ i++++P+dLp ++++ +++fF+k++++ya+g+rk+r+ Bv1_001950_ekgh.t1 55 LPAGVKFDPSDAQLL-EHLAAKCGVGDvkphtfIDE--FIPTLEtdkgICYTHPKDLP-GARKDGCSVHFFHKTSNAYASGQRKRRKiqnd 141 799************.99****99888555433222..2333222244**********.445566799******************84555 PP NAM 78 ..tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++ +W++tgk+k+v++ +g ++g+kk++v+y +++ +k++k++Wvmh+y+l Bv1_001950_ekgh.t1 142 qnQENVRWHKTGKTKPVIE-NGIQKGCKKIMVLYrtSEKGSKPVKSNWVMHQYHL 195 5545899************.99************4434777888*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-37 | 40 | 214 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.435 | 55 | 214 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.2E-13 | 56 | 195 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MAKSWLIDCR GIAKKVRHAT LSSAVPIKDC GAKRECPVCH FWIDNSDVAH EWPGLPAGVK 60 FDPSDAQLLE HLAAKCGVGD VKPHTFIDEF IPTLETDKGI CYTHPKDLPG ARKDGCSVHF 120 FHKTSNAYAS GQRKRRKIQN DQNQENVRWH KTGKTKPVIE NGIQKGCKKI MVLYRTSEKG 180 SKPVKSNWVM HQYHLGLEDD EREGEYVVSK IFYQKEKPTD HTNDNSIVAI EEPNAVTVPY 240 CPKTPKTFTP HPPRGTSIMN DDAMDDSMVT DTEDTKYANT DSCFPLSTQY REDVKPLTCL 300 AGESQAQDQD PDLNDNDDSL LCREIFSSCA PLDDSISLND LSDGVYNGSY GISDLDNIQL 360 DSPPNFQLAD LQFGSQDSMY SWLDELYK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010686990.1 | 0.0 | PREDICTED: NAC domain-containing protein 8 | ||||
Swissprot | Q6NQK2 | 1e-87 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A0K9QMT0 | 1e-180 | A0A0K9QMT0_SPIOL; Uncharacterized protein | ||||
STRING | XP_010686990.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01600.1 | 3e-95 | NAC domain containing protein 44 |