PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Brast10G199400.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

GRAS

Protein Properties

Length: 648aa MW: 73161.3 Da PI: 6.6097

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast10G199400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	315.6	1.1e-96	265	636	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 ++lL++cAeavs +d a++lL+r++ +sp+gd++qRla+yf+++L+arla+++s+ly++l ++ ++e ++a+ l ++ +++ Brast10G199400.1.p 265 QTLLIRCAEAVSRNDWGGASELLERIKRYSSPRGDANQRLAHYFAQGLEARLADTGSQLYRSLIGKHLC---TVELVQAYYLHMATCCFVN 352 689**********************************************************999998...89999********** PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181 ++ l N +I++av+g +++Hi+ +++ G +Wp L+q L++R++gpp++RiT++++p++g +e ++e g+rL +fA+++gv+f+f++ Brast10G199400.1.p 353 VAGLFSNCTIYNAVAGRRKLHIVHYGMITGYKWPLLIQRLSDREGGPPEVRITAINNPQPGfrPAEPIHEAGHRLGHFARKFGVTFKFHT- 442 **********************************************************9***********************. PP GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270 +a + e ++ e+L+++p+E+l+Vn+ +q +l de ++ + +rd vL+++++++P v++++ + +++++ F++rf +al+ ++alfd+ Brast10G199400.1.p 443 IAAKPEVVHAEDLHIDPDEVLVVNSLFQFRTLIDECLTFDRvsPRDMVLNTIRKMKPSVFIHAVVNGSYSAAFFMTRFRQALYNFTALFDM 533 6999***************************98877666******************************************** PP GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361 +++++pr+++ r ++Er +++++++n++aceg++r+er ++++W++r ++aG++++pl+ +++ k l++ + + ++++e++++l++g Brast10G199400.1.p 534 MDTTIPRDNNSRLVLERDIFAWSAMNMIACEGTDRVERPHNYREWQARNQRAGLRQLPLDPDIVVMLKDELKNKYHKHFMIDEDHQWLLQG 624 ****************************************************************9999999899********* PP GRAS 362 WkdrpLvsvSaW 373 Wk+r L+++S W Brast10G199400.1.p 625 WKGRVLYALSTW 636 ********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	54.635	238	617	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.8E-94	265	636	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 648 aa Download sequence Send to blast
MAAEPEELVD FIEPAPLPPS IFLDLPPTTH GDSKQPQDDM SLTYISRMLM EDDINDKLSY 60 KHTDHLKLLQ AEQPFAQILS AAANTSLGAQ ECSAPDVVVS ALMPNQDNNK DSTVCGLLSR 120 EVQDPTFLNG TDLVESNSTL FPSENNRSTS MIFFKGMEEA SMLLPKHNGM SDLRGHKNRF 180 GVDGETEASM GRSSKQIAVL VHTDSEEEDT PLKMLDRLIL NGYDKHPGEM QDVLITLDKE 240 NKVAQKSIHR RGRRGATQPV LTDLQTLLIR CAEAVSRNDW GGASELLERI KRYSSPRGDA 300 NQRLAHYFAQ GLEARLADTG SQLYRSLIGK HLCTVELVQA YYLHMATCCF VNVAGLFSNC 360 TIYNAVAGRR KLHIVHYGMI TGYKWPLLIQ RLSDREGGPP EVRITAINNP QPGFRPAEPI 420 HEAGHRLGHF ARKFGVTFKF HTIAAKPEVV HAEDLHIDPD EVLVVNSLFQ FRTLIDECLT 480 FDRVSPRDMV LNTIRKMKPS VFIHAVVNGS YSAAFFMTRF RQALYNFTAL FDMMDTTIPR 540 DNNSRLVLER DIFAWSAMNM IACEGTDRVE RPHNYREWQA RNQRAGLRQL PLDPDIVVML 600 KDELKNKYHK HFMIDEDHQW LLQGWKGRVL YALSTWVADH ASSSNIT*

Sequence ? help Back to Top

Protein Sequence Length: 648 aa Download sequence Send to blast

MAAEPEELVD FIEPAPLPPS IFLDLPPTTH GDSKQPQDDM SLTYISRMLM EDDINDKLSY  60
KHTDHLKLLQ AEQPFAQILS AAANTSLGAQ ECSAPDVVVS ALMPNQDNNK DSTVCGLLSR  120
EVQDPTFLNG TDLVESNSTL FPSENNRSTS MIFFKGMEEA SMLLPKHNGM SDLRGHKNRF  180
GVDGETEASM GRSSKQIAVL VHTDSEEEDT PLKMLDRLIL NGYDKHPGEM QDVLITLDKE  240
NKVAQKSIHR RGRRGATQPV LTDLQTLLIR CAEAVSRNDW GGASELLERI KRYSSPRGDA  300
NQRLAHYFAQ GLEARLADTG SQLYRSLIGK HLCTVELVQA YYLHMATCCF VNVAGLFSNC  360
TIYNAVAGRR KLHIVHYGMI TGYKWPLLIQ RLSDREGGPP EVRITAINNP QPGFRPAEPI  420
HEAGHRLGHF ARKFGVTFKF HTIAAKPEVV HAEDLHIDPD EVLVVNSLFQ FRTLIDECLT  480
FDRVSPRDMV LNTIRKMKPS VFIHAVVNGS YSAAFFMTRF RQALYNFTAL FDMMDTTIPR  540
DNNSRLVLER DIFAWSAMNM IACEGTDRVE RPHNYREWQA RNQRAGLRQL PLDPDIVVML  600
KDELKNKYHK HFMIDEDHQW LLQGWKGRVL YALSTWVADH ASSSNIT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-39	264	636	5	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast10G199400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003575609.4	0.0	scarecrow-like protein 33
TrEMBL	A0A0Q3L3C3	0.0	A0A0Q3L3C3_BRADI; Uncharacterized protein
STRING	BRADI4G09235.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	1e-131	GRAS family protein

Link Out ? help Back to Top
Phytozome	Brast10G199400.1.p