PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Brast10G199300.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

GRAS

Protein Properties

Length: 612aa MW: 69047 Da PI: 9.3341

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast10G199300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	343.3	4.1e-105	229	600	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 ++lL++cAeav++++ + a++lL r++ ++sp+gd++qRla+yf+e+L+ar+a+ +s+ly+ l +++t+ ++e l+a+klf ++ +lk Brast10G199300.1.p 229 ETLLISCAEAVATNNRRSARELLGRIKWHSSPRGDATQRLAHYFAEGLEARMAGRGSHLYRLLMAKHTP---TVELLKAYKLFMSACCFLK 316 789**********************************************************999999...9************** PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181 +s++ N++I++a++g +++Hi+ ++ + G+QW aLl+ La R++gpp++RiTg+ s ++g +e++ +g+rL + A+++gvpf++++ Brast10G199300.1.p 317 VSFMFSNKTIYKAIAGRKKLHIVHYGSNDGFQWSALLRCLAGRKGGPPEVRITGITSLRPGfrPAEQIDDIGRRLIECAKKFGVPFKYRA- 406 *****************************************************999999***********************. PP GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270 ++ + ed+++e+L+++p+E+l+Vn+ l+ +l+desv +++ +rd vL+++++++P +++++ +a++n++ F++rf + l++++a fd Brast10G199300.1.p 407 IEAKSEDVRVEDLNINPDEVLIVNSLLNFRSLMDESVVIDKlnPRDMVLNTIRKMKPAIFIHAIVNASYNTTFFVTRFRQVLHHFAAHFDI 497 6999******************************999999******************************************* PP GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361 +e++++r++++r +vEr +++r+++n++aceg++r+er +++++W++r ++aG++++pl+ +++++ k +++ + + + v+e++++l++g Brast10G199300.1.p 498 METTVSRDNDKRLVVERDIFARSAMNIIACEGTDRVERPQNYREWQARNRRAGLRQLPLDPDIVQTLKDNVKRQYHKHFVVDEDHQWLLQG 588 ***********************************************************************999********* PP GRAS 362 WkdrpLvsvSaW 373 Wk+r L+++S W Brast10G199300.1.p 589 WKGRVLYALSTW 600 ********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	58.26	202	581	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.4E-102	229	600	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 612 aa Download sequence Send to blast
MAAKPIVFLD HPDPSSQPHD NLALDYISRM LMKEDIVDKF LYQFPNHAAL QQAQHPFDQI 60 LSASDTTITS YAQQSSTPNM LASASILPIG NIPNPSFFLN GMDMGEPNRS MDVISSMAFF 120 RGMEEANRFL PTDREMVDGG RLKNGSSHIG DRTSKQMVVQ VLPETEEEAA AGKMLDQLML 180 GGYDTCPTEA RGRRSPTVER DDGVGKQSSS RKALSGRRSM RLAVVADLET LLISCAEAVA 240 TNNRRSAREL LGRIKWHSSP RGDATQRLAH YFAEGLEARM AGRGSHLYRL LMAKHTPTVE 300 LLKAYKLFMS ACCFLKVSFM FSNKTIYKAI AGRKKLHIVH YGSNDGFQWS ALLRCLAGRK 360 GGPPEVRITG ITSLRPGFRP AEQIDDIGRR LIECAKKFGV PFKYRAIEAK SEDVRVEDLN 420 INPDEVLIVN SLLNFRSLMD ESVVIDKLNP RDMVLNTIRK MKPAIFIHAI VNASYNTTFF 480 VTRFRQVLHH FAAHFDIMET TVSRDNDKRL VVERDIFARS AMNIIACEGT DRVERPQNYR 540 EWQARNRRAG LRQLPLDPDI VQTLKDNVKR QYHKHFVVDE DHQWLLQGWK GRVLYALSTW 600 VADDASSSEV T*

Sequence ? help Back to Top

Protein Sequence Length: 612 aa Download sequence Send to blast

MAAKPIVFLD HPDPSSQPHD NLALDYISRM LMKEDIVDKF LYQFPNHAAL QQAQHPFDQI  60
LSASDTTITS YAQQSSTPNM LASASILPIG NIPNPSFFLN GMDMGEPNRS MDVISSMAFF  120
RGMEEANRFL PTDREMVDGG RLKNGSSHIG DRTSKQMVVQ VLPETEEEAA AGKMLDQLML  180
GGYDTCPTEA RGRRSPTVER DDGVGKQSSS RKALSGRRSM RLAVVADLET LLISCAEAVA  240
TNNRRSAREL LGRIKWHSSP RGDATQRLAH YFAEGLEARM AGRGSHLYRL LMAKHTPTVE  300
LLKAYKLFMS ACCFLKVSFM FSNKTIYKAI AGRKKLHIVH YGSNDGFQWS ALLRCLAGRK  360
GGPPEVRITG ITSLRPGFRP AEQIDDIGRR LIECAKKFGV PFKYRAIEAK SEDVRVEDLN  420
INPDEVLIVN SLLNFRSLMD ESVVIDKLNP RDMVLNTIRK MKPAIFIHAI VNASYNTTFF  480
VTRFRQVLHH FAAHFDIMET TVSRDNDKRL VVERDIFARS AMNIIACEGT DRVERPQNYR  540
EWQARNRRAG LRQLPLDPDI VQTLKDNVKR QYHKHFVVDE DHQWLLQGWK GRVLYALSTW  600
VADDASSSEV T*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	4e-45	232	600	8	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast10G199300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003575610.4	0.0	scarecrow-like protein 33
TrEMBL	A0A0Q3EH21	0.0	A0A0Q3EH21_BRADI; Uncharacterized protein
STRING	TRIUR3_11045-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	1e-142	GRAS family protein

Link Out ? help Back to Top
Phytozome	Brast10G199300.1.p