PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Brast10G199200.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

GRAS

Protein Properties

Length: 620aa MW: 70311.9 Da PI: 6.9295

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast10G199200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	333.9	2.9e-102	237	609	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 ++lL++cAeav+s+d + a +lL+r++ +sp+gd+ qR+a+yf ++L+arla+++++ y+ + ++ts + e ++a+++ ++ +++ Brast10G199200.1.p 237 ETLLIRCAEAVASNDRRSAAELLERIKRYCSPTGDARQRVAHYFSQGLEARLAGTGTQFYRLSTGTRTS---TLELVKAYHMHMATCCFIT 324 789*************************************************999999755555555...8999*********** PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181 ++ l N +I++ v+g +++Hi+ ++i+ G QWp L++ L++R++gpp++RiTg+++p++g + +ee g+rL+++A+++gvpf+f++ Brast10G199200.1.p 325 VALLFSNDTIYKTVAGRRKLHIVHYGINTGYQWPKLIRRLTDREGGPPEVRITGINRPQPGfrPAGLIEEAGDRLSNYANKFGVPFKFHA- 414 *********************************************************9999999******************. PP GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270 +a + e+++ e+++++p+E+l+Vn+++ +l+des++l++ +rd vL+++++++P v+v++ + +++++ F++rf +al+y++alfd+ Brast10G199200.1.p 415 IAAEPEAVRAEDIHIDPDEVLVVNSIFDFRTLMDESLTLDEvnPRDMVLNTIRKMKPSVFVHAVVNGSYSAAFFMTRFRQALYYFTALFDM 505 6999******************************998889******************************************* PP GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361 +e+++p+++++r+ vEre+++r+++n++acega+r+ r ++++W++r ++aG++++pl+++ + k +++ + + ++++e++++l++g Brast10G199200.1.p 506 METTFPEDNNKRVLVEREIFARSAMNMIACEGADRVDRPHNYKEWQARNQRAGLRQMPLNHDLVLMLKEEVKNQYHKNFMINEDHQWLLQG 596 ***********************************************************************999********* PP GRAS 362 WkdrpLvsvSaWr 374 Wk++ L+++S W+ Brast10G199200.1.p 597 WKGQVLYALSTWT 609 **********5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	58.561	210	589	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.0E-99	237	609	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 620 aa Download sequence Send to blast
MPPTTHGAQP PPNDLSLAYI SRILMEEDIA DKFSYQYPDS PKLLQAEQPF AQILSAAATA 60 SFGTQESSVP SMPASALMPS QDNKTDIKIQ DPALLIGTER ETAEPHSTLF SSERSTSMDE 120 LSSMAFFKGI EDASMFLPRD NGMVDGRVRK NRFDVDGETE AGMERSRKQI AVLHTVSEDE 180 DIALKMLDRL VLNGYDKRPG EMREVRATLY KENKASQKSI RMRRRRGAKQ MVVTDLETLL 240 IRCAEAVASN DRRSAAELLE RIKRYCSPTG DARQRVAHYF SQGLEARLAG TGTQFYRLST 300 GTRTSTLELV KAYHMHMATC CFITVALLFS NDTIYKTVAG RRKLHIVHYG INTGYQWPKL 360 IRRLTDREGG PPEVRITGIN RPQPGFRPAG LIEEAGDRLS NYANKFGVPF KFHAIAAEPE 420 AVRAEDIHID PDEVLVVNSI FDFRTLMDES LTLDEVNPRD MVLNTIRKMK PSVFVHAVVN 480 GSYSAAFFMT RFRQALYYFT ALFDMMETTF PEDNNKRVLV EREIFARSAM NMIACEGADR 540 VDRPHNYKEW QARNQRAGLR QMPLNHDLVL MLKEEVKNQY HKNFMINEDH QWLLQGWKGQ 600 VLYALSTWTV DDTSGSEET*

Sequence ? help Back to Top

Protein Sequence Length: 620 aa Download sequence Send to blast

MPPTTHGAQP PPNDLSLAYI SRILMEEDIA DKFSYQYPDS PKLLQAEQPF AQILSAAATA  60
SFGTQESSVP SMPASALMPS QDNKTDIKIQ DPALLIGTER ETAEPHSTLF SSERSTSMDE  120
LSSMAFFKGI EDASMFLPRD NGMVDGRVRK NRFDVDGETE AGMERSRKQI AVLHTVSEDE  180
DIALKMLDRL VLNGYDKRPG EMREVRATLY KENKASQKSI RMRRRRGAKQ MVVTDLETLL  240
IRCAEAVASN DRRSAAELLE RIKRYCSPTG DARQRVAHYF SQGLEARLAG TGTQFYRLST  300
GTRTSTLELV KAYHMHMATC CFITVALLFS NDTIYKTVAG RRKLHIVHYG INTGYQWPKL  360
IRRLTDREGG PPEVRITGIN RPQPGFRPAG LIEEAGDRLS NYANKFGVPF KFHAIAAEPE  420
AVRAEDIHID PDEVLVVNSI FDFRTLMDES LTLDEVNPRD MVLNTIRKMK PSVFVHAVVN  480
GSYSAAFFMT RFRQALYYFT ALFDMMETTF PEDNNKRVLV EREIFARSAM NMIACEGADR  540
VDRPHNYKEW QARNQRAGLR QMPLNHDLVL MLKEEVKNQY HKNFMINEDH QWLLQGWKGQ  600
VLYALSTWTV DDTSGSEET*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-41	240	608	8	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast10G199200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003575611.3	0.0	scarecrow-like protein 34
TrEMBL	A0A0Q3ILB4	0.0	A0A0Q3ILB4_BRADI; Uncharacterized protein
STRING	BRADI4G09155.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	1e-138	GRAS family protein

Link Out ? help Back to Top
Phytozome	Brast10G199200.1.p