PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Brast10G199000.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

GRAS

Protein Properties

Length: 629aa MW: 70549.5 Da PI: 7.244

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast10G199000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	333.6	3.6e-102	247	619	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 + lL++cAeav+s+d++ a++lL+r++ ++sp+gd+ qRla+yf+++L+arla++ s+ly++l s++s ++e ++a++l++ +s ++k Brast10G199000.1.p 247 EMLLIRCAEAVASNDKRSASELLERIKWHSSPTGDARQRLAHYFAQGLEARLAGTRSRLYSSLMGSHNS---TVELMKAYHLYVTTSCFVK 334 579********************************************************99998888...89************* PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181 ++ l N++I++av+g +++Hi+ ++i G QWp L++ La+R++gpp++RiT ++ p+++ +e++ee ++rL+ +A+++gv+f+f++ Brast10G199000.1.p 335 MALLFSNKTIYNAVAGRKKLHIVHYGIDTGSQWPKLIRWLADRDGGPPEVRITNINTPRPKcrLSEQIEEPEHRLSTYASKFGVSFKFRA- 424 *******************************************************9998899********************. PP GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270 +a + e+++ e+L+++p+E+l+Vn+++q +l+des+ + +rd vL+++++++P v+v++ + +++++ F++rf ++l+y++alfd Brast10G199000.1.p 425 IAAKPEAVQAEDLQIDPDEVLVVNSIFQFRTLMDESLRFDRvsPRDMVLNTIRKMKPSVIVHAIANGSYSTAFFMTRFRQTLYYFTALFDV 515 6999****************************9988777******************************************** PP GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361 +e+ +pr+s++r vEr +++++++n++acega+r+er +++++W++r ++aG++++pl+++++ k +++ + ++++e++++l++g Brast10G199000.1.p 516 METAIPRDSNKRLLVERDIFAQSAMNIIACEGADRVERPQNYREWQARNNRAGLRQLPLDQDIVLMLKDEAKNHCHKHFMINEDHQWLLQG 606 *******************************************************************9999899********* PP GRAS 362 WkdrpLvsvSaWr 374 Wk+r L+++S W+ Brast10G199000.1.p 607 WKGRVLYALSTWT 619 **********5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	56.303	220	599	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.2E-99	247	619	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 629 aa Download sequence Send to blast
MAATPEELLG VIESAPPPVF LDLAPASHGD SKQPQDDLSL AYISRMLMED DIVDLPDDLK 60 LLQAEQPFAQ ILCAAATTSS KADESSSHGT LASALLPSKV QDPAFCLNGT GSVKHSSTLF 120 PIESSTGMIK MPSIAFLKGM DEANMLLPRD NVMVGGRGRR NRFDMDGETE AGMGRSRKQI 180 ALVDTDSEED ATTVAMLDRL ILNAYDMHPS EMQEVRVTLD KENKVAQKST CRRGRRGARQ 240 TVVTDLEMLL IRCAEAVASN DKRSASELLE RIKWHSSPTG DARQRLAHYF AQGLEARLAG 300 TRSRLYSSLM GSHNSTVELM KAYHLYVTTS CFVKMALLFS NKTIYNAVAG RKKLHIVHYG 360 IDTGSQWPKL IRWLADRDGG PPEVRITNIN TPRPKCRLSE QIEEPEHRLS TYASKFGVSF 420 KFRAIAAKPE AVQAEDLQID PDEVLVVNSI FQFRTLMDES LRFDRVSPRD MVLNTIRKMK 480 PSVIVHAIAN GSYSTAFFMT RFRQTLYYFT ALFDVMETAI PRDSNKRLLV ERDIFAQSAM 540 NIIACEGADR VERPQNYREW QARNNRAGLR QLPLDQDIVL MLKDEAKNHC HKHFMINEDH 600 QWLLQGWKGR VLYALSTWTV DDSGGSEK*

Sequence ? help Back to Top

Protein Sequence Length: 629 aa Download sequence Send to blast

MAATPEELLG VIESAPPPVF LDLAPASHGD SKQPQDDLSL AYISRMLMED DIVDLPDDLK  60
LLQAEQPFAQ ILCAAATTSS KADESSSHGT LASALLPSKV QDPAFCLNGT GSVKHSSTLF  120
PIESSTGMIK MPSIAFLKGM DEANMLLPRD NVMVGGRGRR NRFDMDGETE AGMGRSRKQI  180
ALVDTDSEED ATTVAMLDRL ILNAYDMHPS EMQEVRVTLD KENKVAQKST CRRGRRGARQ  240
TVVTDLEMLL IRCAEAVASN DKRSASELLE RIKWHSSPTG DARQRLAHYF AQGLEARLAG  300
TRSRLYSSLM GSHNSTVELM KAYHLYVTTS CFVKMALLFS NKTIYNAVAG RKKLHIVHYG  360
IDTGSQWPKL IRWLADRDGG PPEVRITNIN TPRPKCRLSE QIEEPEHRLS TYASKFGVSF  420
KFRAIAAKPE AVQAEDLQID PDEVLVVNSI FQFRTLMDES LRFDRVSPRD MVLNTIRKMK  480
PSVIVHAIAN GSYSTAFFMT RFRQTLYYFT ALFDVMETAI PRDSNKRLLV ERDIFAQSAM  540
NIIACEGADR VERPQNYREW QARNNRAGLR QLPLDQDIVL MLKDEAKNHC HKHFMINEDH  600
QWLLQGWKGR VLYALSTWTV DDSGGSEK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-41	250	618	8	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast10G199000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003575614.2	0.0	scarecrow-like protein 33
TrEMBL	A0A0Q3HFD1	0.0	A0A0Q3HFD1_BRADI; Uncharacterized protein
STRING	BRADI4G09235.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	1e-123	GRAS family protein

Link Out ? help Back to Top
Phytozome	Brast10G199000.1.p