PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Brast10G198800.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

GRAS

Protein Properties

Length: 659aa MW: 73885.9 Da PI: 5.5654

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast10G198800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	316.8	4.6e-97	279	649	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 + Ll c + v++g+++ a+ lL++++++as +gd+ qRla++f+++L+arla+++s++y++l ++ts + e l+ ++lf ++P+ + Brast10G198800.1.p 279 RGMLLCCSQEVATGNHQGAHILLKQIRQHASARGDAAQRLAHCFAQGLEARLAGTGSQVYRSLVEKHTS---TMEFLKGYELFMAACPFKR 366 56899********************************************************999999...899************ PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181 +++ +I +aveg++r+Hi+D+++ +G QWp Ll La+R + pp++RiTg++ p++g +++++etg+ L++ A+++++pf+f++ Brast10G198800.1.p 367 VAFTFSSMTIFNAVEGKSRLHIVDYGLHYGCQWPGLLCWLANRGGRPPEVRITGIDLPQPGfrPSKRIQETGQHLSNCARQFRLPFKFHA- 456 ********************************************************9*************************. PP GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270 ++ ++e+++ e+L+++p+E+l+Vn ++ +l+des+ ++ +rd vL+++++++P+v++ + + ++ Fl+rf eal ++s++fd+ Brast10G198800.1.p 457 ITAKWETIRAEDLNIDPEEVLVVNELFNFNTLMDESLVTDRpsPRDVVLSTIRGMRPDVFIQGVVNGSS-GPFFLARFREALFFHSSVFDM 546 6999****************************98776669************998888776.89*************** PP GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361 l+a+ pr+se+r ++Er ++g+ + n+vacega+r+er et+++W+ r ++aG++++p + ++++ a ++ + + + v+ ++g+l++g Brast10G198800.1.p 547 LDATTPRDSEHRLVLERDMFGQCALNAVACEGADRVERPETYKQWQLRNQRAGLRQLPSKPSVVEVATDKVKSLYHKDFLVDVDQGWLLQG 637 ***********************************************************************888********* PP GRAS 362 WkdrpLvsvSaW 373 Wk+r L++ SaW Brast10G198800.1.p 638 WKGRILYAHSAW 649 ********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	56.815	252	630	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.6E-94	279	649	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 659 aa Download sequence Send to blast
MECSAITSSE FNTMPITSEE LLGLTESVPP SPSVYLDIPP TPYDASVGDL VLPYIARILM 60 EEDIDDRFFY QYPNHPALLR AQQPFAEILE ETKNLLSSEG GDMERMNSDA SLQGARGGSM 120 FLAGKEDIQS WAILDGAEVE NNGDQRKLSL CNEDMLNLAF LKGMEEANKF LPRDNSLQAG 180 AFSIGQAREM LLVRSASGRR RCDDGEEVVG RASKLMVLEL EEDGAHELLE KLMLNSCEFR 240 GEAMQKLRIT MEKTEAERRS MKAGRGRQQR NRGDSVDLRG MLLCCSQEVA TGNHQGAHIL 300 LKQIRQHASA RGDAAQRLAH CFAQGLEARL AGTGSQVYRS LVEKHTSTME FLKGYELFMA 360 ACPFKRVAFT FSSMTIFNAV EGKSRLHIVD YGLHYGCQWP GLLCWLANRG GRPPEVRITG 420 IDLPQPGFRP SKRIQETGQH LSNCARQFRL PFKFHAITAK WETIRAEDLN IDPEEVLVVN 480 ELFNFNTLMD ESLVTDRPSP RDVVLSTIRG MRPDVFIQGV VNGSSGPFFL ARFREALFFH 540 SSVFDMLDAT TPRDSEHRLV LERDMFGQCA LNAVACEGAD RVERPETYKQ WQLRNQRAGL 600 RQLPSKPSVV EVATDKVKSL YHKDFLVDVD QGWLLQGWKG RILYAHSAWV ADDTSSDD*

Sequence ? help Back to Top

Protein Sequence Length: 659 aa Download sequence Send to blast

MECSAITSSE FNTMPITSEE LLGLTESVPP SPSVYLDIPP TPYDASVGDL VLPYIARILM  60
EEDIDDRFFY QYPNHPALLR AQQPFAEILE ETKNLLSSEG GDMERMNSDA SLQGARGGSM  120
FLAGKEDIQS WAILDGAEVE NNGDQRKLSL CNEDMLNLAF LKGMEEANKF LPRDNSLQAG  180
AFSIGQAREM LLVRSASGRR RCDDGEEVVG RASKLMVLEL EEDGAHELLE KLMLNSCEFR  240
GEAMQKLRIT MEKTEAERRS MKAGRGRQQR NRGDSVDLRG MLLCCSQEVA TGNHQGAHIL  300
LKQIRQHASA RGDAAQRLAH CFAQGLEARL AGTGSQVYRS LVEKHTSTME FLKGYELFMA  360
ACPFKRVAFT FSSMTIFNAV EGKSRLHIVD YGLHYGCQWP GLLCWLANRG GRPPEVRITG  420
IDLPQPGFRP SKRIQETGQH LSNCARQFRL PFKFHAITAK WETIRAEDLN IDPEEVLVVN  480
ELFNFNTLMD ESLVTDRPSP RDVVLSTIRG MRPDVFIQGV VNGSSGPFFL ARFREALFFH  540
SSVFDMLDAT TPRDSEHRLV LERDMFGQCA LNAVACEGAD RVERPETYKQ WQLRNQRAGL  600
RQLPSKPSVV EVATDKVKSL YHKDFLVDVD QGWLLQGWKG RILYAHSAWV ADDTSSDD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	8e-38	282	649	8	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast10G198800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003575617.3	0.0	scarecrow-like protein 9
Refseq	XP_024319186.1	0.0	scarecrow-like protein 9
TrEMBL	A0A2K2CLH0	0.0	A0A2K2CLH0_BRADI; Uncharacterized protein
STRING	BRADI4G09170.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-129	GRAS family protein

Link Out ? help Back to Top
Phytozome	Brast10G198800.1.p