PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Brast10G198500.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

GRAS

Protein Properties

Length: 622aa MW: 69312.8 Da PI: 6.2557

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast10G198500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	337.9	1.8e-103	244	615	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 +lLl+cA+avs++d++ a +lL+++++++s +gd+ qRla+yf +L+arla+ +sely++l +++ts ++++l+a +l ++ + k Brast10G198500.1.p 244 HTLLLQCAQAVSTDDKQGAGELLKKIKQNSSTTGDAAQRLAHYFSVGLEARLAGRGSELYESLMVQRTS---VVDVLKANQLHMAACCCRK 331 679*************************************************************999...*************** PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181 +s++ ++I++av+g +r+Hi+D++i+ GlQWp Ll+ La+R++gpp++RiTg++ p++g + +e tg+rL++fA+ +gvpf+f+ Brast10G198500.1.p 332 VSFFFSDKTIYNAVAGRSRLHIVDYGINLGLQWPGLLRMLAAREGGPPEVRITGIDLPQPGfrGAYHIEDTGRRLSNFARVFGVPFKFRG- 421 ********************************************************999999********************. PP GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270 +a + e++++e+L+++p+E+l+V + + +l+de++ +s +rd+vL+ +++++P+v+++ +++++ Fl+rf eal +ysa fd Brast10G198500.1.p 422 IAAKRETVRPEDLNINPDEVLVVVSLCHFRHLMDENLGFDSpsPRDQVLNNIRKMRPDVFIHGILSGSYGATYFLTRFREALFHYSAHFDQ 512 69999***************************98887779******************************************* PP GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361 l++++pr+++ r +Er ++gr++ nv+acega+r+er et+++W+ r ++aG++++pl+ +++k + ++ + + + v+e++ +lv+ Brast10G198500.1.p 513 LDVTVPRDNHGRLLLERDIFGRSALNVIACEGADRVERPETYKQWQLRNHRAGLSQLPLNPEVVKLVLDKVKDNYHKDFVVDEDQRWLVQR 603 *********************************************************************99888********* PP GRAS 362 WkdrpLvsvSaW 373 Wk+r L+++SaW Brast10G198500.1.p 604 WKGRVLYAMSAW 615 ********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	58.194	217	596	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.1E-101	244	615	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 622 aa Download sequence Send to blast
MAGGATPEEE FLRQSFLARL EPPSPSLFLD LPPTPRAAAG EAGSSSSSFD DMVLPYISQL 60 LMEEEDMADH FFYLYPQHPA LLRAQLPFAQ ILEDNSSAGS APTPSSSDSS SPADGCPELR 120 AVQSSALPNQ DMLNLAFLKG MEEARKFLPV VAAAEEDGLL KKKRGNSEPE EEGRASKLMA 180 PELEEEDDGA RELLDEMMFD EKEICMKGVQ NLQVAEPVKK SRKGTRQRGR QKKAAVDGEM 240 VDLHTLLLQC AQAVSTDDKQ GAGELLKKIK QNSSTTGDAA QRLAHYFSVG LEARLAGRGS 300 ELYESLMVQR TSVVDVLKAN QLHMAACCCR KVSFFFSDKT IYNAVAGRSR LHIVDYGINL 360 GLQWPGLLRM LAAREGGPPE VRITGIDLPQ PGFRGAYHIE DTGRRLSNFA RVFGVPFKFR 420 GIAAKRETVR PEDLNINPDE VLVVVSLCHF RHLMDENLGF DSPSPRDQVL NNIRKMRPDV 480 FIHGILSGSY GATYFLTRFR EALFHYSAHF DQLDVTVPRD NHGRLLLERD IFGRSALNVI 540 ACEGADRVER PETYKQWQLR NHRAGLSQLP LNPEVVKLVL DKVKDNYHKD FVVDEDQRWL 600 VQRWKGRVLY AMSAWVAGNA I*

Sequence ? help Back to Top

Protein Sequence Length: 622 aa Download sequence Send to blast

MAGGATPEEE FLRQSFLARL EPPSPSLFLD LPPTPRAAAG EAGSSSSSFD DMVLPYISQL  60
LMEEEDMADH FFYLYPQHPA LLRAQLPFAQ ILEDNSSAGS APTPSSSDSS SPADGCPELR  120
AVQSSALPNQ DMLNLAFLKG MEEARKFLPV VAAAEEDGLL KKKRGNSEPE EEGRASKLMA  180
PELEEEDDGA RELLDEMMFD EKEICMKGVQ NLQVAEPVKK SRKGTRQRGR QKKAAVDGEM  240
VDLHTLLLQC AQAVSTDDKQ GAGELLKKIK QNSSTTGDAA QRLAHYFSVG LEARLAGRGS  300
ELYESLMVQR TSVVDVLKAN QLHMAACCCR KVSFFFSDKT IYNAVAGRSR LHIVDYGINL  360
GLQWPGLLRM LAAREGGPPE VRITGIDLPQ PGFRGAYHIE DTGRRLSNFA RVFGVPFKFR  420
GIAAKRETVR PEDLNINPDE VLVVVSLCHF RHLMDENLGF DSPSPRDQVL NNIRKMRPDV  480
FIHGILSGSY GATYFLTRFR EALFHYSAHF DQLDVTVPRD NHGRLLLERD IFGRSALNVI  540
ACEGADRVER PETYKQWQLR NHRAGLSQLP LNPEVVKLVL DKVKDNYHKD FVVDEDQRWL  600
VQRWKGRVLY AMSAWVAGNA I*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-42	247	615	8	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	265	270	LKKIKQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast10G198500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024319187.1	0.0	scarecrow-like protein 9
Refseq	XP_024319188.1	0.0	scarecrow-like protein 9
TrEMBL	I1IJ23	0.0	I1IJ23_BRADI; Uncharacterized protein
STRING	BRADI4G09190.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-136	GRAS family protein

Link Out ? help Back to Top
Phytozome	Brast10G198500.1.p