PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast10G177700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family E2F/DP
Protein Properties Length: 332aa    MW: 37553.7 Da    PI: 10.385
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast10G177700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP71.69.1e-2361126171
             E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                         rk+ksLrll+++f++l+ ++  ++v l+++a +L    v  +rRRiYDi+NVLe+++++ +++kne++w+g
  Brast10G177700.1.p  61 RKQKSLRLLCSNFVALYDNKGVETVGLDNAAAHL---RV--RRRRIYDIVNVLESVGMLVRRAKNEYTWIG 126
                         79*****************999************...88..9***************************98 PP
2E2F_TDP58.41.1e-181382081171
             E2F_TDP  11 qkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                         ++f+kl+ +++ ++++l+eva  L+ e     +++ k+RR+YDi+NVL++l+liek     ++k+ irw g
  Brast10G177700.1.p 138 KNFVKLFLTTKIETISLDEVACLLLGEvqaegNMRSKVRRLYDIANVLSSLKLIEKktqedTRKPTIRWLG 208
                         79******************************************************9999999******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.4E-2558127IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.9E-1560125IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013729.0E-2661126IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023198.8E-2062126IPR003316E2F/DP family, winged-helix DNA-binding domain
SMARTSM013725.2E-18129208IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.0E-14138208IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.4E-16138210IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.7E-9147209IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MDTPAAAAAA QEKPYQLRPS RRLLQLHGDG GGSSAVRSSR RLLQLYGDGG GDGAEERPYD  60
RKQKSLRLLC SNFVALYDNK GVETVGLDNA AAHLRVRRRR IYDIVNVLES VGMLVRRAKN  120
EYTWIGFQGI PAALKEIKNF VKLFLTTKIE TISLDEVACL LLGEVQAEGN MRSKVRRLYD  180
IANVLSSLKL IEKKTQEDTR KPTIRWLGPS KQNERNDVTV DLLPTRKTLS SKRSLSTDIP  240
RSRLKTYENP QEQAKSSGFL FGASHPTGSK KQELDNHIRE KERKSIKDWE SLATTHRPRY  300
KNQAVNDLFG NYVEVWKSWH SEFMRGTPSD P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A5e-1461140487Transcription factor E2F8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast10G177700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024310302.11e-115E2F transcription factor-like E2FE
TrEMBLA0A2K2CM221e-113A0A2K2CM22_BRADI; Uncharacterized protein
STRINGSb04g028440.18e-96(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31853884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.13e-34DP-E2F-like 1