PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast10G172700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HB-other
Protein Properties Length: 932aa    MW: 102729 Da    PI: 5.7097
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast10G172700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox15.92.3e-05693753154
                         TT--SS--HHHHHHHHHHHHHSSS-..-HHHHHHHHHHC.....TS-HHHHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFeknryp..saeereeLAkkl.....gLterqVkvWFqNrRak 54 
                         r+kRt +++ q++e e++ + ++ +  +a+  +  A+kl     ++t +q k+W  Nr+ak
  Brast10G172700.1.p 693 RKKRTIMNDGQINEIENALADEPEMhrNATLLQAWAEKLsgqgsEITSSQLKNWLNNRKAK 753
                         89******************87666114556899999999999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-4685754IPR009057Homeodomain-like
PROSITE profilePS5007110.333690757IPR001356Homeobox domain
SMARTSM003890.0051692761IPR001356Homeobox domain
CDDcd000860.00247693756No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0060195Biological Processnegative regulation of antisense RNA transcription
GO:0005730Cellular Componentnucleolus
GO:0003697Molecular Functionsingle-stranded DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 932 aa     Download sequence    Send to blast
MPPSPRPPPA PPSPLPGGLG VSVSEMIDMV SAVEELSVLT SRELSEMLKE SESFVLQCKA  60
EDGGPKQVDM EKLVSSLPRH LLAVCLELGS GSDLTYVLRG MRFLHSLSEL ATRHTRLEQV  120
LLDDVKLSEQ VLDLIFFVLA ILSYRKEENH LGASPFLHSS LVAASLHLLT SYFSSQWNEL  180
VSILLAHAKV GIFMDVAFDS LHEDMKSLNL RLSTFGTDAF PVGPLESQLT HFICQQCESS  240
LQFLLLLCQQ KSFRDRILEN KELCRNGGIL SLSLTILKLG VPECLKGSAH IASSISRLKA  300
KVLSIVLQLC EAETISYLDE VATLPKSMQL GQTFALEVLD LLKTAFGRKE KSVAGSHDKS  360
YPMGSVLISA LRLVDVFSDD SNFRSSFITN TIPFLTQILA TPHDEFVSSW CSVNMLVTED  420
DANLEYDPFG AAELALLAAS NMLTEAKANY LCPLRTINTA IPYAQTRTSY VVKIIANLHV  480
FVPNICEEQE RDLFLQKFQK YLLSESRRPS LDNPASDEAS TVCRNLGSLS HYAKLLIPNK  540
LLNEDDVHLL SEFACKLQTW CKSVAGLSTL QVAKSDASSQ IKEDLQRVQQ PLQTRANDVQ  600
NTEESMPTPY MNHEGNARDE TPRNRASINC GLLQNSVGQN LIHLGVARTT SAGYMGVSTA  660
TSTELQHGRS VEHFKTPEHI KGSGLLDDDG RRRKKRTIMN DGQINEIENA LADEPEMHRN  720
ATLLQAWAEK LSGQGSEITS SQLKNWLNNR KAKLARIAKE RGVPSEGENA DKPSTPATSH  780
FGDSSESAGE ESYFPPPRVM NALGISKGNG LLNPGTNDTT TQAEFNQNIM TSRPFTRSYS  840
LEPGRPVLLI DNEGNEIGRG EIFQVEGMAQ GKSLTESRTC IIDITELKIE KWRELPHPSE  900
ASGRTFQEAE SRHGGVMRVA WDVIRIAPVV L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1690695RRRKKR
2690696RRRKKRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast10G172700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010237477.10.0nodulin homeobox isoform X1
TrEMBLA0A0Q3IMJ20.0A0A0Q3IMJ2_BRADI; Uncharacterized protein
STRINGBRADI4G11517.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51261418