PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast10G148100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 273aa    MW: 29780 Da    PI: 9.9561
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast10G148100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.37.3e-053881249
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHH CS
                 HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAve 49
                        +  + erE+  Rd++N+ f eL ++l  +     +   Ka++L  A +
  Brast10G148100.1.p 38 KNHKAEREKLKRDQLNDLFVELSSMLDLD----RQNSGKATVLGDAAR 81
                        677899*******************9885....344445555555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-1034100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-735106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.5693686IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00344292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MVADTESSDS PSGSSNSAAE KRVDGCLDRR SQDKAPKKNH KAEREKLKRD QLNDLFVELS  60
SMLDLDRQNS GKATVLGDAA RVLRDLLTQV ESLRKEQSAL LTERQYVGSE KNELQDENTT  120
LKAQIIELQT ELRARMGNNS LNLSSLGMSH PVGSSSTNLA SHPRPHHTWS NVSNLSTLPM  180
AHPMNTPSLL QNQRQHSVGS GHVASQPQEL QLFPGTSASL DRERSRLRSN PATSSSLADS  240
LPGQLRLSLP RASQGESSSS GAPRNRKERK NC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast10G148100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010237571.11e-164transcription factor BHLH062
TrEMBLI1IKJ81e-163I1IKJ8_BRADI; Uncharacterized protein
STRINGBRADI4G14190.21e-163(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129592124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.33e-33bHLH family protein