 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Brast10G121300.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
| Family |
NF-YC |
| Protein Properties |
Length: 256aa MW: 27904.1 Da PI: 5.2527 |
| Description |
NF-YC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Brast10G121300.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NF-YC | 64.7 | 1.8e-20 | 7 | 86 | 19 | 98 |
NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
+++P arikki++adedv +i+ +Pvl+s+a elf+ +l rs++ + ++ +tl+ ++++v+r + fdfl++iv +
Brast10G121300.1.p 7 TRFPAARIKKIMQADEDVGKIALAVPVLVSRALELFLQDLIDRSYNITVQSGAKTLNSFHLKQCVKRYNSFDFLTEIVNK 86
579*************************************************************************9976 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 256 aa
Download sequence Send
to blast |
MRKKLGTRFP AARIKKIMQA DEDVGKIALA VPVLVSRALE LFLQDLIDRS YNITVQSGAK 60
TLNSFHLKQC VKRYNSFDFL TEIVNKVPDL GGADSCGDER GLPRRRKLSN GSDPENEEPR 120
SSKMPIRSLN TSPRGRGRGR GRGRGRPPTK RKEVGYVQFE DESSMFAEQS EPLPGDDAIP 180
ETKCGNESIP QSANPPADAP STGQPAAISK LEEASTDHQP DWPMPDAIGG IGVGPSSFGH 240
LTVQVDEDED YDNED*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 102 | 106 | PRRRK |
| 2 | 135 | 144 | RGRGRGRGRG |
| 3 | 135 | 145 | RGRGRGRGRGR |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KM078730 | 0.0 | KM078730.1 Triticum aestivum CCAAT-binding transcription factor C (NFYC-B6) mRNA, complete cds. |
