PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast10G110700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 846aa    MW: 93026.4 Da    PI: 6.8688
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast10G110700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.65.7e-24143244199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k+lt sd++++g +++ +++a+e+          ++ +++lt +d++g +W++++i+r++++r++l++GW+ Fv+a++L +gD ++F  
  Brast10G110700.1.p 143 FCKTLTASDTSTHGGFSVLRRHADEClppldmsR--QPPTQELTAKDLHGAEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFL- 230
                         99*****************************733..334459************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          + +++el+v+v+r+
  Brast10G110700.1.p 231 -RGENGELRVGVRRA 244
                         .449999*****996 PP
2Auxin_resp1141.4e-37269351183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         a+ha++t+++F+v+Y+Pr+s++eFvv++++++++lk+++s+GmRfkm+fe+e+++e+r++Gt+vg+ d+dp  W +SkWr+Lk
  Brast10G110700.1.p 269 AWHAVNTGTMFTVYYKPRTSPAEFVVPYDRYMESLKRNYSIGMRFKMRFEGEEAPEQRFTGTIVGMGDSDPAGWAESKWRNLK 351
                         89******************************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-42136258IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.77E-41138272IPR015300DNA-binding pseudobarrel domain
CDDcd100178.75E-22141243No hitNo description
PROSITE profilePS5086311.928143245IPR003340B3 DNA binding domain
SMARTSM010197.4E-24143245IPR003340B3 DNA binding domain
PfamPF023626.7E-22143244IPR003340B3 DNA binding domain
PfamPF065077.4E-35269351IPR010525Auxin response factor
PfamPF023097.2E-11712807IPR033389AUX/IAA domain
PROSITE profilePS5174520.763717801IPR000270PB1 domain
SuperFamilySSF542771.08E-9721793No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 846 aa     Download sequence    Send to blast
MSCAAAAAAA AAGGGEGDAA TAAARAGGGE DALFSELWSA CAGPLVTVPK VGDKVFYFPQ  60
GHIEQVEAST NQVAEQRMQL YNLPWKILCE VMNVELKAES DTDEVYAQLT LLPESKQQEE  120
NASTEEVSAV PSAAPLRPRV HSFCKTLTAS DTSTHGGFSV LRRHADECLP PLDMSRQPPT  180
QELTAKDLHG AEWRFRHIFR GQPRRHLLQS GWSVFVSAKR LVAGDAFIFL RGENGELRVG  240
VRRAMRQQTN VPSSVISSHS MHLGVLATAW HAVNTGTMFT VYYKPRTSPA EFVVPYDRYM  300
ESLKRNYSIG MRFKMRFEGE EAPEQRFTGT IVGMGDSDPA GWAESKWRNL KVRWDEASSI  360
PRPERVSPWQ IEPAVSPPPI NPLPVPRTKR PRPNVIASAP DSSAQAKEVA PKVAAETQQH  420
ALQRAFQTQE NATPKTGFGD GSELDIAQKS ILQPSRFERE KNNIPTQRKL GSDGWMQMNK  480
PESYGEMLSG FQPPKDAQSQ QGFRSYPEQI AAGHSNFWHT VNSHYQDQQG NHSMFPGTWS  540
LMSQNTGFGL NKQNYPMMQE VAGLPQRAAN TKFGNGVYAA LPGHGIDQYS TGWFGHMMPS  600
SHMDDTQPRV IKPQPLVVAH GDMQKTKGAS CKLFGIHLDS PAKSEPLKSP PSVAYDGMPQ  660
TPGGAEWCRM EGTDPEKCSD PSKTLKPLDA DSGPEKHLSC QQASRNTSGK SQGGSARSCK  720
KVHKQGIALG RSVDLTKFSG YTELIAELDD MFDFNGELKS SNKEWMVVYT DHEDDMMLVG  780
DDPWSEFCNI VHKIFIYTRE EVQRMAPGAL NSRSEESPAN SMERGSAARE VRGCLSASSL  840
NSENC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1732737313354Auxin response factor 1
4ldw_A1e-1732737313354Auxin response factor 1
4ldw_B1e-1732737313354Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1388392KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast10G110700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010237690.10.0auxin response factor 23 isoform X1
RefseqXP_010237691.10.0auxin response factor 23 isoform X1
SwissprotA2ZET60.0ARFW_ORYSI; Auxin response factor 23
TrEMBLI1ILH10.0I1ILH1_BRADI; Auxin response factor
STRINGBRADI4G17410.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117836111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2