PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast10G110600.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 469aa    MW: 49350.9 Da    PI: 4.9992
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast10G110600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.22.3e-06358380729
                         HHHHHHHHHHHHHHHHHHCTSCC CS
                 HLH   7 erErrRRdriNsafeeLrellPk 29 
                         ++ErrRR+++N+++  Lr+++P 
  Brast10G110600.2.p 358 MAERRRRKKLNDRLYMLRSVVPR 380
                         79********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.74E-6351383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508888.607351417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-6358382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.26E-6358386No hitNo description
CDDcd048735.30E-5400437No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MAISTCGQHS FFIVFAFRSF WFMVLYGVEV SVDVWNSALI CSPLSCYCSA ISAASPLLLL  60
RPRSAAISAA MLSGFNSSLW MQEEDDEQQP AGIMAMLPMM GLEGGNCIDN DQQQLLAMAS  120
GGFRVPGTVP DDWYFGGAPG SAAMFLGPPA PQGFGVGSQA TLPIFNLGGA GPFDASGFDL  180
GNGNNNNNNP GAEFMSFLGA GNGSSLMPPA GSFFGSFGGF GTAPQMPAGL ASAGFDAGAG  240
GSSSSFQAPF SLRPLEVVPS LGAQPTLFQK RALLRRNAGQ EDGHGSKKRQ ADTAPVDADE  300
DDVSIDASGL NYDSEVDGRG VEESGGDDGK EPNNANSGGG AAEGKGKKSK GMPAKNLMAE  360
RRRRKKLNDR LYMLRSVVPR ISKVEVRVRE GEAYNIHMLC ARRPGLLHST LNAIDALNLD  420
VQQAVISCFN GFVMDIFKAE RVKTDVPLPQ PDQVKAVLLQ IAGFHPMI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1359366ERRRRKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast10G110600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1096452e-35AC109645.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone P0410D09, complete sequence.
GenBankAC1507022e-35AC150702.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone B1356E08, complete sequence.
GenBankAP0149672e-35AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankCP0126192e-35CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014757472.11e-137transcription factor SCREAM2 isoform X1
RefseqXP_014757473.11e-137transcription factor SCREAM2 isoform X2
TrEMBLA0A0Q3ELE21e-136A0A0Q3ELE2_BRADI; Uncharacterized protein
TrEMBLA0A0Q3L7151e-136A0A0Q3L715_BRADI; Uncharacterized protein
STRINGBRADI4G17460.11e-111(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.46e-28bHLH family protein