PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast10G070100.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 618aa    MW: 65583.9 Da    PI: 6.3791
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast10G070100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.22.1e-06222243526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C+ f ++  C++Gd C +aHg
  Brast10G070100.2.p 222 PCPEFKKGAGCRRGDMCEYAHG 243
                         8******88************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.15E-924135IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.208.3E-1154137IPR020683Ankyrin repeat-containing domain
PfamPF127962.4E-656124IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029712.06356127IPR020683Ankyrin repeat-containing domain
CDDcd002045.16E-558132No hitNo description
PROSITE profilePS5008810.17992127IPR002110Ankyrin repeat
SMARTSM003569.8E-4217244IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-4220244IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.258222245IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.925253277IPR000571Zinc finger, CCCH-type
SMARTSM0035687253276IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MGEASEYGGL DVAAVSSRLL ELAADDDAEA LGCLLAVHPS LADEPAPWYS PARGAEPMTP  60
LMVAAAYGSV ACLDALLSPP HLADPNRASA SSLSTPLHLA AAGGAPSAPT AVSRLLASGA  120
DPTLLDHLHR RPSDLVALPL NSLPLKNHLL SLLGARKEWP PDPSLPDIKN GAYASDDFRM  180
YSFKVRACSR AYSHDWTECP FVHPGENARR RDPRKYHYSC VPCPEFKKGA GCRRGDMCEY  240
AHGVFESWLH PAQYRTRLCK DGVGCARRVC FFAHTPEELR PLYVSTGSAV PSPRGAMEMA  300
AMGMGLSSPG SSFTPPMSPS GGGSGMSWPQ PNLPALCLPG SAGNLHLSRL RTSLSARAMA  360
VDELLAAVDY ENHVGSPASV RSARGKALVP SNLDELFSAE MAASHSPRYA DQGGAAHSPT  420
HRSALLNQFQ QQQSLLSPRA VATPEPVSPM SSRLLAALAQ REKMQQQTLR SMSSRDLGSS  480
ASVLVGSPVV SSSWSKWGLP SGAPDWGADN DELGRLKRSS SFDLRSGANT DEPDLSWVNT  540
LVKEPTPEKS LIHGTMGTES IGILGRSANH REGIDGEDIA ILGRSANRRE GIDGEEDAAT  600
GVIGGWLEQL QLDEMVV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast10G070100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024310956.10.0zinc finger CCCH domain-containing protein 67
SwissprotQ2QPW20.0C3H67_ORYSJ; Zinc finger CCCH domain-containing protein 67
TrEMBLI1II160.0I1II16_BRADI; Uncharacterized protein
STRINGBRADI4G06290.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-125CCCH-type zinc finger protein with ARM repeat domain