PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast10G043200.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Dof

Protein Properties

Length: 379aa MW: 39600.8 Da PI: 8.5102

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast10G043200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.4	6.6e-38	130	187	5	62
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +l+cprCds+ntkfCy+nnyslsqPr+fCkaCrryWt+GGalrnvPvGgg+r+n k+s Brast10G043200.1.p 130 TLRCPRCDSANTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNTKRS 187 679***************************************************9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-30	113	181	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.273	131	185	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.8E-31	131	185	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	133	169	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MGFSSFPIFL DPPNWSQMQQ QQPLQCLMSG GGGSDHHHHL IPPPSSQHHH HQQQQQLAPL 60 PCNNNNTNNN TATSGPPPGS LQQQPSSVDP AAQPLAQDQA PSAQVAPSSG VTSMTERARL 120 ARVPLPEPGT LRCPRCDSAN TKFCYFNNYS LSQPRHFCKA CRRYWTRGGA LRNVPVGGGC 180 RRNTKRSSSK KSSRSSNSQS QSQATSSATS SCSTTTAASA STTSAAAMQA LPHHLGLQLE 240 ASLEGYHGGH HGQLQFLPAF MQQQQQGMMM MQHGGHGGGY GHFADGGVGD VGSAGQQQLP 300 DGFPRGMVAS GLLAQLASIK MEEHGAIANG GAGGIVGGGG FQLGLQAAHE QYWPGSVGGG 360 WPTEFLSGFS SSSSGNVL*

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MGFSSFPIFL DPPNWSQMQQ QQPLQCLMSG GGGSDHHHHL IPPPSSQHHH HQQQQQLAPL  60
PCNNNNTNNN TATSGPPPGS LQQQPSSVDP AAQPLAQDQA PSAQVAPSSG VTSMTERARL  120
ARVPLPEPGT LRCPRCDSAN TKFCYFNNYS LSQPRHFCKA CRRYWTRGGA LRNVPVGGGC  180
RRNTKRSSSK KSSRSSNSQS QSQATSSATS SCSTTTAASA STTSAAAMQA LPHHLGLQLE  240
ASLEGYHGGH HGQLQFLPAF MQQQQQGMMM MQHGGHGGGY GHFADGGVGD VGSAGQQQLP  300
DGFPRGMVAS GLLAQLASIK MEEHGAIANG GAGGIVGGGG FQLGLQAAHE QYWPGSVGGG  360
WPTEFLSGFS SSSSGNVL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast10G043200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK371779	9e-84	AK371779.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2141F19.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010237142.2	1e-145	dof zinc finger protein DOF2.2
TrEMBL	A0A0Q3L1I0	1e-144	A0A0Q3L1I0_BRADI; Uncharacterized protein
STRING	BRADI4G04260.1	2e-96	(Brachypodium distachyon)
STRING	Traes_5BS_037093F0B.1	2e-96	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28810.2	3e-37	Dof family protein

Link Out ? help Back to Top
Phytozome	Brast10G043200.1.p