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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast10G036500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 224aa MW: 25017.5 Da PI: 6.3595 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 45.4 | 2.5e-14 | 61 | 183 | 9 | 128 |
NAM 9 PtdeelvveyLkkkvegkkleleevikevdiykv....ePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 Ptd elv ++L++ ++ ++ e + +vd+++v +P +Lp + k+++ +y+F g + n t +gyW + +++ + Brast10G036500.1.p 61 PTDVELVENHLRPAFQRLPVAKEIIRGRVDVNTVlpfmNPFKLPgVEGKEGRIGMYYFQLG-----FGYKDNLETPDGYWAKRDWGRAIEV 146 9******************888454556688775333488999933444444488999875.....45678899*******9988888877 PP NAM 95 k.....kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++ +g+kkt+ f+k +k +kt+W+m+ y+l Brast10G036500.1.p 147 TkgdrgGTDIIGIKKTFDFHKY--KKDTKTKWTMNIYSL 183 7456555555**********54..5556*******9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 20.263 | 53 | 201 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.11E-18 | 60 | 201 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.7E-10 | 61 | 183 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MSIDLPPSSV VEESQARPGG DFVSSHLSLV PPPLPAQTDL PALTVEQELQ AWELPDLPSI 60 PTDVELVENH LRPAFQRLPV AKEIIRGRVD VNTVLPFMNP FKLPGVEGKE GRIGMYYFQL 120 GFGYKDNLET PDGYWAKRDW GRAIEVTKGD RGGTDIIGIK KTFDFHKYKK DTKTKWTMNI 180 YSLVSSARVQ DLLVLCHVFE QDSAGYDSRP KCPTFHQGKC NGN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast10G036500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003578557.1 | 1e-62 | uncharacterized protein LOC100842183 isoform X1 | ||||
Refseq | XP_024310914.1 | 1e-62 | formin-like protein 6 isoform X2 | ||||
TrEMBL | A0A0Q3HDB1 | 5e-61 | A0A0Q3HDB1_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G03620.1 | 4e-62 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18590 | 8 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39610.1 | 2e-11 | NAC domain containing protein 6 |
Link Out ? help Back to Top | |
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Phytozome | Brast10G036500.1.p |