PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast10G030800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 302aa    MW: 32652.2 Da    PI: 4.5785
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast10G030800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.73.2e-112312711055
                         HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r+RR+riN+++ +L++l+P+      +K++ +++Le+Av+Y+k Lq
  Brast10G030800.1.p 231 RKRRERINERLKTLQTLVPNG-----TKVDMSTMLEEAVHYVKFLQ 271
                         9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.281221270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-14225287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-13226283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-12227276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.34E-13230275No hitNo description
PfamPF000101.0E-8231271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MEAGGLISEA GWTMFDFPSQ GEESEIMSQL LGAFPSHLEE DHQDLPWYQA SEPSYYDCNL  60
NTSSGSNASS LAVPSECMGY YLGDSSESLD LSSCIAPNDL NLVQEQDATE FLNMTPNLSL  120
DLRGNGESSC EDLTSVGPTN KRKHSSAEEG IDGQARGRKC ARKAEQKRTK KAKQSGGQAA  180
VATRNGSTAS CCTSDDDSNA SQESADAGVC LKGKARAGRG ASTDPQSLYA RKRRERINER  240
LKTLQTLVPN GTKVDMSTML EEAVHYVKFL QLQIKVLSSD DMWMYAPIAY NGMNIGLDLN  300
I*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast10G030800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003579215.10.0transcription factor bHLH139
SwissprotQ3E7L78e-52BH139_ARATH; Transcription factor bHLH139
TrEMBLA0A0Q3EEE80.0A0A0Q3EEE8_BRADI; Uncharacterized protein
STRINGBRADI4G03070.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43103270
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.14e-51bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]