PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Brast10G006600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 176aa MW: 19236.6 Da PI: 8.836 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 28 | 4.6e-09 | 68 | 117 | 2 | 51 |
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 ++l+r rr+++NRe+ArrsR+RK+ +ee + ++L a N++L+ +l + Brast10G006600.1.p 68 ERLRRLRRRISNRESARRSRKRKQRHLEEQRATEAALRAGNRDLAARLRH 117 5799*****************************************98876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 4.2E-5 | 64 | 146 | No hit | No description |
SMART | SM00338 | 0.0037 | 67 | 131 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.875 | 69 | 119 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.78E-5 | 70 | 120 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 74 | 89 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 1.52E-10 | 77 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 176 aa Download sequence Send to blast |
MAALEMEMPM LPFFPDDIDA FLADIGLGFD DHEAPTPPPA LCTSPEEETS AGTVGGATDA 60 GAGDDDRERL RRLRRRISNR ESARRSRKRK QRHLEEQRAT EAALRAGNRD LAARLRHARA 120 RAAFAAMANA RLRSEAHALS LRLQRLSSFF PVSGAGTQAP AALLHHQDAF FSFSC* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 73 | 89 | RRRISNRESARRSRKRK |
2 | 83 | 89 | RRSRKRK |
3 | 83 | 90 | RRSRKRKQ |
4 | 85 | 90 | SRKRKQ |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Brast10G006600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003579093.2 | 2e-42 | ocs element-binding factor 1 | ||||
TrEMBL | A0A3B6LFC2 | 4e-26 | A0A3B6LFC2_WHEAT; Uncharacterized protein | ||||
STRING | BRADI4G00810.1 | 8e-42 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15125 | 19 | 19 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Brast10G006600.1.p |