PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast09G268800.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 338aa MW: 37143.2 Da PI: 6.556 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.7 | 9.2e-53 | 15 | 156 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...............kvkaeek.....ewyfFskrdkkyatg 71 +ppGfrFhPt+eelv +yL++kv+++k++l ++i+evd+y++ePwdL++ + ewyfFs +d+ky++g Brast09G268800.2.p 15 VPPGFRFHPTEEELVGYYLARKVASQKIDL-DIIQEVDLYRIEPWDLQElcgrqystggaghdeD-----NsrpaaEWYFFSFKDRKYPSG 99 69****************************.99**************966888888776654321.....123456*************** PP NAM 72 krknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +r+nrat++g+Wkatg+dk+vls +++++g++ktLvfy+grap+g+kt+W+mheyrl Brast09G268800.2.p 100 TRTNRATAAGFWKATGRDKPVLSPSSRVIGMRKTLVFYRGRAPNGRKTEWIMHEYRL 156 *******************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.32E-57 | 13 | 177 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.542 | 15 | 177 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.9E-28 | 16 | 156 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MEHHQGQQDD QSCCVPPGFR FHPTEEELVG YYLARKVASQ KIDLDIIQEV DLYRIEPWDL 60 QELCGRQYST GGAGHDEDNS RPAAEWYFFS FKDRKYPSGT RTNRATAAGF WKATGRDKPV 120 LSPSSRVIGM RKTLVFYRGR APNGRKTEWI MHEYRLQSSE HAPTPEEGWV VCRAFHKPIP 180 NMQMHLARPP LPFVIPGAVG PASGYYANDI DARLSGHGHA GDLLNYLHPA AAASNSGGGF 240 VFPGNGNGNG NGSGHGAQLV LSEDLVESKK HLNIFPQLIE SPANEDDQAG AGQQQAAAGA 300 IDWNFLDSLL SSTSSSSQQL IHDSSQSQLM MHLQQHH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-49 | 15 | 177 | 15 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast09G268800.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ693426 | 1e-124 | JQ693426.1 Brachypodium distachyon SWN5 (SWN5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010240666.1 | 1e-143 | protein SOMBRERO isoform X2 | ||||
Swissprot | O65508 | 7e-84 | NAC76_ARATH; NAC domain-containing protein 76 | ||||
TrEMBL | A0A0Q3HBL1 | 1e-141 | A0A0Q3HBL1_BRADI; Uncharacterized protein | ||||
STRING | BRADI5G27467.1 | 1e-142 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36160.1 | 1e-84 | NAC domain containing protein 76 |
Link Out ? help Back to Top | |
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Phytozome | Brast09G268800.2.p |
Publications ? help Back to Top | |||
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