PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G248000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 300aa    MW: 31303.1 Da    PI: 9.6542
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G248000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.35.4e-08100125227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         kt+ C  +     C++Gd+C+FaHg+
  Brast09G248000.1.p 100 KTRMCTKYNTAEGCRFGDKCHFAHGE 125
                         9***********************96 PP
2zf-CCCH39.68.5e-13265290127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ykt++C +f++ GtC +GdrC+FaHg+
  Brast09G248000.1.p 265 YKTKICENFLK-GTCTFGDRCHFAHGE 290
                         9**********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.3243462IPR000571Zinc finger, CCCH-type
SMARTSM003563.63461IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-53559IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-73559IPR000571Zinc finger, CCCH-type
PfamPF146081.14259No hitNo description
Gene3DG3DSA:4.10.1000.104.0E-1397128IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.75198126IPR000571Zinc finger, CCCH-type
SMARTSM003560.1298125IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-899128IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-4100125IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.65E-13161237IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.107.5E-14166236IPR004088K Homology domain, type 1
SMARTSM003225.0E-10166236IPR004087K Homology domain
PROSITE profilePS5008413.544167231IPR004088K Homology domain, type 1
CDDcd001051.35E-12169231No hitNo description
PfamPF000131.2E-9169231IPR004088K Homology domain, type 1
SuperFamilySSF902291.57E-9263294IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-15263294IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-9264290IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.92264291IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-10265290IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MDGAAAARKR SRTDTANGGA KRSKETESQQ TGLSSKSKPC TKFFSTVGCP FGEGCHFLHF  60
VPGGYQAVSK THNLGHAAVS APSRAPMDHG ANSHPAPAGK TRMCTKYNTA EGCRFGDKCH  120
FAHGERELGR TTYESSYAPP MGGRFGSRHE PPPPAMTGPP TGSFGASATA KISVDAALAG  180
GIIGKSGVNT KQICRVTGVK LSIRDHESDP NLKNIELEGN FDQIKQASDM VGELIATISA  240
STPLKNPAGA VPPAGRGGPG GRSNYKTKIC ENFLKGTCTF GDRCHFAHGE NEQRKGAAV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G248000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580767.10.0zinc finger CCCH domain-containing protein 31
SwissprotQ7XPK11e-151C3H31_ORYSJ; Zinc finger CCCH domain-containing protein 31
TrEMBLI1J3340.0I1J334_BRADI; Uncharacterized protein
STRINGBRADI5G25340.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-73C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]