PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G234500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 456aa    MW: 48111.1 Da    PI: 7.0459
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G234500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.6e-17105154155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Brast09G234500.1.p 105 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 154
                         78*******************......55************************997 PP
2AP243.29.9e-14196246155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV+ +k  grW+A+   +     +k+++lg f+t+eeAa+ +++a+ k +g
  Brast09G234500.1.p 196 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEEEAARSYDRAAIKCNG 246
                         89********.7******5553..2.26**********************99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-16105163IPR016177DNA-binding domain
PfamPF008475.1E-9105154IPR001471AP2/ERF domain
SMARTSM003801.1E-31106168IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-17106162IPR001471AP2/ERF domain
PROSITE profilePS5103217.701106162IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-17196256IPR016177DNA-binding domain
PfamPF008477.7E-10196246IPR001471AP2/ERF domain
CDDcd000184.72E-25196256No hitNo description
SMARTSM003801.2E-32197260IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-16197254IPR001471AP2/ERF domain
PROSITE profilePS5103216.186197254IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0010093Biological Processspecification of floral organ identity
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MWDLNDSPAA EGPPPPLSPP SVDDSGASSS SAAAVVEIPD DDDSAVLTRQ FFPPAVVPGE  60
PAPGAANGWL RLAGAPPPAA APPGGGAAAT AAGKKSRRGP RSRSSQYRGV TFYRRTGRWE  120
SHIWDCGKQV YLGGFDTAHA AARAYDRAAI KFRGVEADIN FSLEDYDDIK QMGNLTKEEF  180
VHVLRRQSTG FPRGSSKYRG VTLHKCGRWE ARMGQFLGKK YVYLGLFDTE EEAARSYDRA  240
AIKCNGKDAV TNFDPSIYAE EFEPTAETGD GEQNLDLSLG SSAGSKRGSL DDDDGAAGSD  300
QRVPMAFELD WQTAARSTKA KLDQNLKHQQ MPPPVLQASH LPFSPRHHQF VSHGGDPGTA  360
GGLSLTVGTA SGGAGHWPPH LQQQQSLHGG WGNNGAGAGT SWPPPVPHPA APTPTNAAAA  420
AAAAAAASSR FPPYIASQAQ SWLQKNGFHS LARPS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor (PubMed:22408071). Involved in spikelet transition and development (PubMed:22408071). Prevents lemma and palea elongation as well as grain growth (PubMed:22408071). Required for seed shattering through specifying abscission zone (AZ) development (PubMed:22408071). {ECO:0000269|PubMed:22408071}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G234500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3601490.0AK360149.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1111J04.
GenBankAK3719530.0AK371953.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2143N17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580693.10.0AP2-like ethylene-responsive transcription factor TOE3
SwissprotB8AVJ90.0APL25_ORYSI; APETALA2-like protein 5
TrEMBLI1J2M70.0I1J2M7_BRADI; Uncharacterized protein
STRINGBRADI5G24100.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55143658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.22e-99AP2 family protein
Publications ? help Back to Top
  1. Zhou Y, et al.
    Genetic control of seed shattering in rice by the APETALA2 transcription factor shattering abortion1.
    Plant Cell, 2012. 24(3): p. 1034-48
    [PMID:22408071]