PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast09G226400.2.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bZIP

Protein Properties

Length: 413aa MW: 45944 Da PI: 5.3361

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast09G226400.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36.2	1.3e-11	115	157	2	41
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 +++k+ rr+++NReAAr+sR+RKka+i++Le+ k ++Le+e Brast09G226400.2.p 115 PPDKVLRRLAQNREAARKSRLRKKAYIQQLETsriKLAQLEQE 157 5799**************************9722244444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	5.9E-8	113	161	No hit	No description
SMART	SM00338	2.6E-5	114	167	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.887	116	160	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.2E-8	116	156	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.13E-7	118	162	No hit	No description
PROSITE pattern	PS00036	0	121	136	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.1E-27	208	285	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009409	Biological Process	response to cold
GO:0042742	Biological Process	defense response to bacterium
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MELYPGYLED HFNIHKLSGA GTSPPEYMTS ASAQFAPAPL RMGMYERPPP PQQQPQPVVG 60 MWNSVDTYKV DSGQATSGST IMEADPKFDD PELEEVPGME ELEPARDVDQ EASKPPDKVL 120 RRLAQNREAA RKSRLRKKAY IQQLETSRIK LAQLEQELQR ARQQQGAVYP PGMSSGMAGF 180 GGGGVPMDSG VAAFEIEYGH WVDEQNRHTR ELRGALQPGQ QTTELELRML VETGLGNYDH 240 LFRIKNLAAS ADVFCVMSGM WRSPAERFFL WIGGFRPSEV LKVLRPQLEP LTDQQLEQVY 300 HLQQSSTQAE DALSQGMERL QQTLADALTA AADPFASPDA YSGMNDAIAK LKGLVCFLHQ 360 ADHLRLETLQ QMQKILTTRQ AARGLLALGD YFERLRALSS LWAARPRESA IS*

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MELYPGYLED HFNIHKLSGA GTSPPEYMTS ASAQFAPAPL RMGMYERPPP PQQQPQPVVG  60
MWNSVDTYKV DSGQATSGST IMEADPKFDD PELEEVPGME ELEPARDVDQ EASKPPDKVL  120
RRLAQNREAA RKSRLRKKAY IQQLETSRIK LAQLEQELQR ARQQQGAVYP PGMSSGMAGF  180
GGGGVPMDSG VAAFEIEYGH WVDEQNRHTR ELRGALQPGQ QTTELELRML VETGLGNYDH  240
LFRIKNLAAS ADVFCVMSGM WRSPAERFFL WIGGFRPSEV LKVLRPQLEP LTDQQLEQVY  300
HLQQSSTQAE DALSQGMERL QQTLADALTA AADPFASPDA YSGMNDAIAK LKGLVCFLHQ  360
ADHLRLETLQ QMQKILTTRQ AARGLLALGD YFERLRALSS LWAARPRESA IS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00502	DAP	Transfer from AT5G10030	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast09G226400.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003580646.1	0.0	transcription factor TGAL6
Swissprot	A0A0P0WFC8	0.0	TGAL6_ORYSJ; Transcription factor TGAL6
TrEMBL	A0A0Q3KXI5	0.0	A0A0Q3KXI5_BRADI; Uncharacterized protein
STRING	BRADI5G23340.1	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10030.2	1e-108	TGACG motif-binding factor 4

Link Out ? help Back to Top
Phytozome	Brast09G226400.2.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Okada A, et al. OsTGAP1, a bZIP transcription factor, coordinately regulates the inductive production of diterpenoid phytoalexins in rice. J. Biol. Chem., 2009. 284(39): p. 26510-8 [PMID:19635799] Okada K The biosynthesis of isoprenoids and the mechanisms regulating it in plants. Biosci. Biotechnol. Biochem., 2011. 75(7): p. 1219-25 [PMID:21737944] Yamane H Biosynthesis of phytoalexins and regulatory mechanisms of it in rice. Biosci. Biotechnol. Biochem., 2013. 77(6): p. 1141-8 [PMID:23748776] Miyamoto K, et al. Identification of target genes of the bZIP transcription factor OsTGAP1, whose overexpression causes elicitor-induced hyperaccumulation of diterpenoid phytoalexins in rice cells. PLoS ONE, 2014. 9(8): p. e105823 [PMID:25157897] Miyamoto K, et al. Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells. J. Plant Physiol., 2015. 173: p. 19-27 [PMID:25462074]