PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Nin-like

Protein Properties

Length: 773aa MW: 84560 Da PI: 6.8377

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast09G225900.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.7	1.1e-28	398	449	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl++l+kyFs+++kdAAk+Lgvc+T+LKriCR +GI+RWP+Rki+++ Brast09G225900.3.p 398 AEKNISLDVLRKYFSGSLKDAAKSLGVCPTTLKRICRTHGISRWPSRKINKV 449 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55781	4.32E-5	39	118	IPR029016	GAF domain-like
PROSITE profile	PS51519	16.745	388	469	IPR003035	RWP-RK domain
Pfam	PF02042	7.0E-26	401	449	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.09E-23	669	755	No hit	No description
SMART	SM00666	2.1E-22	672	754	IPR000270	PB1 domain
PROSITE profile	PS51745	24.865	672	754	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	4.8E-23	672	753	No hit	No description
CDD	cd06407	2.92E-30	673	753	No hit	No description
Pfam	PF00564	1.8E-18	673	753	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 773 aa Download sequence Send to blast
MPVEQEGHVV LSTSDQPFLL DQSLAGYREV SRNFVFSAKE ETGLHPGLPG RVFISGVPEW 60 TSNVLYYSKP EYLRMEYALR HEVRGSLAMP IYDPSKGSCC AVLELITKKE KPDFNAEMDS 120 VRQALQAVSL KTAKDCGNQK FYTEKQKAAF TEILDVLRAI CHAHMLPLAL TWVPMSNGID 180 GAYVVGNDGA IDSQSGKEIL CVHESACYVN DAKMKGFFQA CAESPLEKGQ GIAGRALKSN 240 LPFFSPNIRE YNIMDYPLAH HARKFGLHAA VAIRLRSTYT GNDDYILEFF LPVNCKGSGE 300 QQLLLNNLSS TMQRICKSLR TVAESEVDKV DARDAVLYKT TSESVSPTGH SESSSHCDKP 360 ITEASFQDLS LVDKQGYMEP EQVQSSSMRL AEKKRSTAEK NISLDVLRKY FSGSLKDAAK 420 SLGVCPTTLK RICRTHGISR WPSRKINKVN RSLKKIQTVI NSVHGVDSSL QYDPGTGSLV 480 PAASLPEKRP TSSTDTLPAP SSGKTVEQKS GPKSEQAYSS PDGWQSESYQ VPFSNAEKGE 540 GGEFHMQTSN HIDSGDHTSY GANVTTHFSP EGTQGQLYPV GTVSAFHLKE TGSVSPYVSA 600 RPSAENTGDQ IVGRNSPSLQ QADIDMVDDH EAREHTHPST SGMTDSSSGS ASSHPTFKKN 660 PGHALKGKSG PTLTVKATYN GDTVRFKFLP SLGWYQLLEE IAKRFKLSTG TFQLKYKDDE 720 DEWVLLANDS DLQECVDVMD SMGSCNVKLQ VRDLPCLISS SSGSSTCLRL PT*

Sequence ? help Back to Top

Protein Sequence Length: 773 aa Download sequence Send to blast

MPVEQEGHVV LSTSDQPFLL DQSLAGYREV SRNFVFSAKE ETGLHPGLPG RVFISGVPEW  60
TSNVLYYSKP EYLRMEYALR HEVRGSLAMP IYDPSKGSCC AVLELITKKE KPDFNAEMDS  120
VRQALQAVSL KTAKDCGNQK FYTEKQKAAF TEILDVLRAI CHAHMLPLAL TWVPMSNGID  180
GAYVVGNDGA IDSQSGKEIL CVHESACYVN DAKMKGFFQA CAESPLEKGQ GIAGRALKSN  240
LPFFSPNIRE YNIMDYPLAH HARKFGLHAA VAIRLRSTYT GNDDYILEFF LPVNCKGSGE  300
QQLLLNNLSS TMQRICKSLR TVAESEVDKV DARDAVLYKT TSESVSPTGH SESSSHCDKP  360
ITEASFQDLS LVDKQGYMEP EQVQSSSMRL AEKKRSTAEK NISLDVLRKY FSGSLKDAAK  420
SLGVCPTTLK RICRTHGISR WPSRKINKVN RSLKKIQTVI NSVHGVDSSL QYDPGTGSLV  480
PAASLPEKRP TSSTDTLPAP SSGKTVEQKS GPKSEQAYSS PDGWQSESYQ VPFSNAEKGE  540
GGEFHMQTSN HIDSGDHTSY GANVTTHFSP EGTQGQLYPV GTVSAFHLKE TGSVSPYVSA  600
RPSAENTGDQ IVGRNSPSLQ QADIDMVDDH EAREHTHPST SGMTDSSSGS ASSHPTFKKN  660
PGHALKGKSG PTLTVKATYN GDTVRFKFLP SLGWYQLLEE IAKRFKLSTG TFQLKYKDDE  720
DEWVLLANDS DLQECVDVMD SMGSCNVKLQ VRDLPCLISS SSGSSTCLRL PT*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast09G225900.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010240492.1	0.0	protein NLP2
Swissprot	Q0JC27	0.0	NLP2_ORYSJ; Protein NLP2
TrEMBL	A0A0Q3IF86	0.0	A0A0Q3IF86_BRADI; Uncharacterized protein
STRING	BRADI5G23300.1	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	1e-174	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Brast09G225900.3.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]