PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast09G218300.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

HD-ZIP

Protein Properties

Length: 787aa MW: 85267 Da PI: 6.3198

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast09G218300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.8	5.2e-20	118	171	4	57
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++t++q++e+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k+ Brast09G218300.1.p 118 YHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 171 6789***********************************************995 PP
2	START	182.1	3e-57	295	518	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS.............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-T CS START 1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv............dsgealrasgvvdmvlallveellddkeqWde 74 ela +a++el+++a ++ep+W e +n++e+ + f ++ +ea+r+s+vv+ ++a+lve+l+d++ q+ Brast09G218300.1.p 295 ELAVAAMEELLRMARLDEPLWAGPGvagpmETLNEEEYARMF--GGPragglgpkqygqLVSEASRESAVVILTPANLVEILMDVN-QYAA 382 57899**************9876779999*******..4446699*******************************.6666 PP T-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEE CS START 75 tla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgili 154 + +a+tl+v+s+g galq+m+ elq++splvp R+++fvRy++q ++g+w++vdvS+d q ++++++pSg+li Brast09G218300.1.p 383 VFSsivsRAATLDVLSTGvagcydGALQVMSVELQVPSPLVPtRESYFVRYCKQNSDGTWAVVDVSLDTLQG-------IKCRRRPSGCLI 466 6655555*********************************************************9987.......78****** PP EEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 155 epksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ++ +ng+skvtwvehv++++r++h++++ lv+sgla+ga++wv +l+rqce+ Brast09G218300.1.p 467 QEAPNGYSKVTWVEHVEVDDRSVHNIYKLLVNSGLAFGARRWVGALGRQCER 518 ************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.5E-21	98	170	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.47E-18	108	178	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.487	112	172	IPR001356	Homeobox domain
SMART	SM00389	4.0E-18	113	176	IPR001356	Homeobox domain
CDD	cd00086	1.30E-18	114	173	No hit	No description
Pfam	PF00046	1.3E-17	118	170	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	147	170	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	36.561	286	521	IPR002913	START domain
CDD	cd08875	7.02E-110	290	517	No hit	No description
SuperFamily	SSF55961	4.51E-32	293	520	No hit	No description
SMART	SM00234	4.0E-47	295	518	IPR002913	START domain
Pfam	PF01852	1.3E-47	296	518	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	2.2E-4	360	511	IPR023393	START-like domain
SuperFamily	SSF55961	2.15E-23	539	776	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 787 aa Download sequence Send to blast
MMIPARHMPS SMIGRSSAAY GSSSSALSLG QPNLLDSNHQ QLHHQQQQLL DHQIPAMAES 60 GDNSSRSRRS MVRRRSEPLG EDFESRSGSE NGDGVEDELQ QQEQQADPNQ RPRKQNRYHR 120 HTQHQIQEME AFFKECPHPD DKQRKELSRE LGLEPLQVKF WFQNKRTQMK NQHERHENSQ 180 LRSDNDKLRA ENMRYKEALS SASCPSCGGP AALGEMSFDE HHLRLENARL RDEIDRISAI 240 AAKYVGKPSV PFPVLSNPLA AVGAYGHHPG ADMFGELQPP MRPTGSDQSK GVVVELAVAA 300 MEELLRMARL DEPLWAGPGV AGPMETLNEE EYARMFGGPR AGGLGPKQYG QLVSEASRES 360 AVVILTPANL VEILMDVNQY AAVFSSIVSR AATLDVLSTG VAGCYDGALQ VMSVELQVPS 420 PLVPTRESYF VRYCKQNSDG TWAVVDVSLD TLQGIKCRRR PSGCLIQEAP NGYSKVTWVE 480 HVEVDDRSVH NIYKLLVNSG LAFGARRWVG ALGRQCERLA SVMASNIPNS DVGVITSSEG 540 KKSMLKLAER MVASFCGGVT ASVAHQWTRL SGSGAEDVRV MTRQSVDDPG RPPGIVLNAA 600 TSFWLPVPPK RVFDFLRDET SRSQWDILSN GGVVQEMAHI ANGRDHGNCV SLLRVNSTNS 660 NQSNMLILQE SCTDASGSYV IYAPVDIVAM NVVLNGGDPD YVALLPSGFA ILPDGPAGTI 720 HTGGGPSVTD GGVGSGGSLL TVAFQILVDS VPTAKLSLGS VATVNSLIAC TVERIKAAIS 780 GESSPQ*

Sequence ? help Back to Top

Protein Sequence Length: 787 aa Download sequence Send to blast

MMIPARHMPS SMIGRSSAAY GSSSSALSLG QPNLLDSNHQ QLHHQQQQLL DHQIPAMAES  60
GDNSSRSRRS MVRRRSEPLG EDFESRSGSE NGDGVEDELQ QQEQQADPNQ RPRKQNRYHR  120
HTQHQIQEME AFFKECPHPD DKQRKELSRE LGLEPLQVKF WFQNKRTQMK NQHERHENSQ  180
LRSDNDKLRA ENMRYKEALS SASCPSCGGP AALGEMSFDE HHLRLENARL RDEIDRISAI  240
AAKYVGKPSV PFPVLSNPLA AVGAYGHHPG ADMFGELQPP MRPTGSDQSK GVVVELAVAA  300
MEELLRMARL DEPLWAGPGV AGPMETLNEE EYARMFGGPR AGGLGPKQYG QLVSEASRES  360
AVVILTPANL VEILMDVNQY AAVFSSIVSR AATLDVLSTG VAGCYDGALQ VMSVELQVPS  420
PLVPTRESYF VRYCKQNSDG TWAVVDVSLD TLQGIKCRRR PSGCLIQEAP NGYSKVTWVE  480
HVEVDDRSVH NIYKLLVNSG LAFGARRWVG ALGRQCERLA SVMASNIPNS DVGVITSSEG  540
KKSMLKLAER MVASFCGGVT ASVAHQWTRL SGSGAEDVRV MTRQSVDDPG RPPGIVLNAA  600
TSFWLPVPPK RVFDFLRDET SRSQWDILSN GGVVQEMAHI ANGRDHGNCV SLLRVNSTNS  660
NQSNMLILQE SCTDASGSYV IYAPVDIVAM NVVLNGGDPD YVALLPSGFA ILPDGPAGTI  720
HTGGGPSVTD GGVGSGGSLL TVAFQILVDS VPTAKLSLGS VATVNSLIAC TVERIKAAIS  780
GESSPQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast09G218300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003580598.1	0.0	homeobox-leucine zipper protein ROC2
Swissprot	Q0J9X2	0.0	ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2
TrEMBL	I1J240	0.0	I1J240_BRADI; Uncharacterized protein
STRING	BRADI5G22570.2	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP799	38	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04890.1	0.0	protodermal factor 2

Link Out ? help Back to Top
Phytozome	Brast09G218300.1.p

Publications ? help Back to Top
Chou IT,Gasser CS Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins. Plant Mol. Biol., 1997. 35(6): p. 873-92 [PMID:9426607]