PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast09G174500.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Dof

Protein Properties

Length: 390aa MW: 39570.8 Da PI: 8.2997

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast09G174500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.9	2.5e-39	86	147	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss Brast09G174500.1.p 86 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 147 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-32	80	144	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.6E-33	88	144	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.059	90	144	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	92	128	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009639	Biological Process	response to red or far red light
GO:0009845	Biological Process	seed germination
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MDAAHWHQGL GLLKPMEEML MGSTTTAGAN QQQVQGSNPN LPLQPPSSSS SAPGACGGAM 60 GLAGAVVAGV GSSGGAGVER KARPQKEKAL NCPRCNSTNT KFCYYNNYSL QQPRYFCKTC 120 RRYWTEGGSL RNVPVGGGSR KNKRSSSSSS SANAAAAAAS ASVMASSTSM SMASKNPKLA 180 HEGGGAQHDL NLAFPHHVAH GGMQQQADQY MAFPSLESSS IGGGAMASGN NNGRHGALSA 240 MELLRSTGCY MPSLHVPMQM PGPGEYGAAG FSLGEFRAAP GPPQPQSQGL LGFSLDAHGG 300 PVASAMQGMP PHQDRAGRML FPFEDLKPTD ASGSSGGGGG DESGAGAGGE NGGHRYEQAG 360 SKEQGNGHAG GHDTAPGFWN GMIGGGTSW*

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MDAAHWHQGL GLLKPMEEML MGSTTTAGAN QQQVQGSNPN LPLQPPSSSS SAPGACGGAM  60
GLAGAVVAGV GSSGGAGVER KARPQKEKAL NCPRCNSTNT KFCYYNNYSL QQPRYFCKTC  120
RRYWTEGGSL RNVPVGGGSR KNKRSSSSSS SANAAAAAAS ASVMASSTSM SMASKNPKLA  180
HEGGGAQHDL NLAFPHHVAH GGMQQQADQY MAFPSLESSS IGGGAMASGN NNGRHGALSA  240
MELLRSTGCY MPSLHVPMQM PGPGEYGAAG FSLGEFRAAP GPPQPQSQGL LGFSLDAHGG  300
PVASAMQGMP PHQDRAGRML FPFEDLKPTD ASGSSGGGGG DESGAGAGGE NGGHRYEQAG  360
SKEQGNGHAG GHDTAPGFWN GMIGGGTSW*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast09G174500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB028129	2e-85	AB028129.1 Oryza sativa Japonica Group mRNA for Dof zinc finger protein, complete cds, clone: OsDof-18.
GenBank	AK060659	2e-85	AK060659.1 Oryza sativa Japonica Group cDNA clone:001-028-A11, full insert sequence.
GenBank	AL662954	2e-85	AL662954.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0005N02, complete sequence.
GenBank	AL663003	2e-85	AL663003.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0032E06, complete sequence.
GenBank	AP014960	2e-85	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBank	CP012612	2e-85	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBank	CR855149	2e-85	CR855149.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0103M18, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003580343.1	1e-178	dof zinc finger protein 1
Swissprot	Q9SXG8	1e-101	DOF1_ORYSJ; Dof zinc finger protein 1
TrEMBL	A0A0Q3ECG5	1e-177	A0A0Q3ECG5_BRADI; Uncharacterized protein
STRING	BRADI5G18640.1	1e-165	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2369	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	4e-40	Dof family protein

Link Out ? help Back to Top
Phytozome	Brast09G174500.1.p

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159]