PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G168600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 601aa    MW: 66768.7 Da    PI: 7.0668
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G168600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM93.24.2e-29231542127
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.kvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgkd 89 
                         p+GfrF Ptdeelv +yL ++++g+++  +++i e ++y+++P +L + + +++e +wyf ++r++ky++gkr+ r t+  +g+Wka+  +
  Brast09G168600.1.p  23 PRGFRFMPTDEELVEYYLLPRLQGRPHVPNDCIIEDNVYRCHPDELINgHKDKGEGNWYFLTPRSRKYTKGKRPDRGTDdhRGRWKASTGT 113
                         89************************888899**************8514444556********************766569****87766 PP

                 NAM  90 kevlsk...kgelvglkktLvfykgrapkgektdWvmheyr 127
                         ke  ++   +++++    +L ++ g+ ++ +kt+W+m e +
  Brast09G168600.1.p 114 KETEKEtvgNERVKFFESMLGYHVGSIENEKKTKWLMRELT 154
                         6666655767788899999*******************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.42E-3421183IPR003441NAC domain
PROSITE profilePS5100537.38522183IPR003441NAC domain
PfamPF023654.8E-1623153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MAEGEEQKKS GGKEGEEKKI TYPRGFRFMP TDEELVEYYL LPRLQGRPHV PNDCIIEDNV  60
YRCHPDELIN GHKDKGEGNW YFLTPRSRKY TKGKRPDRGT DDHRGRWKAS TGTKETEKET  120
VGNERVKFFE SMLGYHVGSI ENEKKTKWLM RELTVPKYQI KRDKNGGGPS KLDEYVMCRI  180
YVTPRNKGED DDEAGPSGTS TCQEQEASPA PPSQPEPVES GAQGRAGPNN LSARQKGKRP  240
IEAMRRGPMA TPKRERTLDL LLGPPAPLHD GGGMQPRFGS GAGYQYAGPG RPMSMQRPPM  300
AFSGRVGPRA HTSMPRPPMA FTGQMRPSAH TSSMPAFSGQ VPPYRAAHGA AAAGNFGQAM  360
MMPRPMNPAG QAFRTPAPTV TRSPEERMQP ETEEMRENRV FQQQHMNEWM MHGGGMQVQV  420
QQQPAGNVAA CPTQPMAFTQ QHEWMCGTVQ QQPGNVTYAT QQSHEPMTFF AQQEQQEQHL  480
YFDGDVNHHQ YLGQPMVLQS QYTPCHYQHV EVGQQFQSSC AVVVPDSAAE TMPVATAEVQ  540
RAEEAEPEIG ARMMGVHTPE GTSTTMRGSA LLGWQQRTAV LPDGTSASAD DDDTRHDSQR  600
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-181918114163NO APICAL MERISTEM PROTEIN
1ut4_B1e-181918114163NO APICAL MERISTEM PROTEIN
1ut7_A1e-181918114163NO APICAL MERISTEM PROTEIN
1ut7_B1e-181918114163NO APICAL MERISTEM PROTEIN
3swm_A1e-181918117166NAC domain-containing protein 19
3swm_B1e-181918117166NAC domain-containing protein 19
3swm_C1e-181918117166NAC domain-containing protein 19
3swm_D1e-181918117166NAC domain-containing protein 19
3swp_A1e-181918117166NAC domain-containing protein 19
3swp_B1e-181918117166NAC domain-containing protein 19
3swp_C1e-181918117166NAC domain-containing protein 19
3swp_D1e-181918117166NAC domain-containing protein 19
4dul_A1e-181918114163NAC domain-containing protein 19
4dul_B1e-181918114163NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G168600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024311838.10.0uncharacterized protein LOC100827131
TrEMBLA0A2K2CHY20.0A0A2K2CHY2_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143612024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.17e-22NAC domain containing protein 32