PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G164000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 287aa    MW: 30110.8 Da    PI: 4.9471
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G164000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.96.1e-19107157155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         + y+GVr+++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  Brast09G164000.1.p 107 PSYRGVRRRS-WGKWVSEIREPRK---KSRIWLGTFPTAEQAARAHDVAALAIKG 157
                         57*****887.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-13107157IPR001471AP2/ERF domain
CDDcd000182.14E-31107166No hitNo description
Gene3DG3DSA:3.30.730.109.2E-33108166IPR001471AP2/ERF domain
SMARTSM003802.8E-37108171IPR001471AP2/ERF domain
PROSITE profilePS5103224.289108165IPR001471AP2/ERF domain
SuperFamilySSF541716.02E-22108166IPR016177DNA-binding domain
PRINTSPR003673.7E-11109120IPR001471AP2/ERF domain
PRINTSPR003673.7E-11131147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MEADASHAPT TSSSSVSSST LSTSSSTSSL ANSAQQPPKK NTKPKHPKKR KRAADQEQAA  60
ATNNGAQGDQ ESSSCCTEDL DHAASGKAAL PEPDAGGAVP KSGFKHPSYR GVRRRSWGKW  120
VSEIREPRKK SRIWLGTFPT AEQAARAHDV AALAIKGRSA HLNFPDRAHE LPRPDSTSPA  180
DIQAAAARAA AQCEDTTPTS SASSSPAVDA ASPDPDEAAA ACTEAEQEAV QQEDHSGGDS  240
DALLFDLPDL LLDLRDGLFF WSPVWPAAEE YDGGCVGLGE PLLWTE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-19103165972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14450KHPKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G164000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3559751e-105AK355975.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1028H04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010240211.11e-115ethylene-responsive transcription factor ERF038
SwissprotQ8LBQ79e-47ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLI1J0B91e-113I1J0B9_BRADI; Uncharacterized protein
STRINGBRADI5G17610.11e-114(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.16e-42ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]