PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G158900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 243aa    MW: 26857.9 Da    PI: 5.0696
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G158900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox611.8e-1949102456
                         -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         +++ft+eq++ Le+ F+  + ++  +e++eLA++lgL+ rqV +WFqN+Ra+++
  Brast09G158900.1.p  49 KRRFTEEQIRSLESTFHAhHAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 102
                         458**************9899********************************9 PP
2HD-ZIP_I/II1246.8e-4048140293
         HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         +krr+++eq+++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+d++aL+++ydal+++ e+L++e+ +L+++l
  Brast09G158900.1.p  48 RKRRFTEEQIRSLESTFHAHHaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDFAALRAKYDALHSRVESLKQEKLTLTTQL 138
                         8******************999******************************************************************999 PP

         HD-ZIP_I/II  92 ke 93 
                         +e
  Brast09G158900.1.p 139 HE 140
                         86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.9E-1839106IPR009057Homeodomain-like
PROSITE profilePS5007117.84843104IPR001356Homeobox domain
SMARTSM003891.8E-1846108IPR001356Homeobox domain
CDDcd000865.41E-1848105No hitNo description
PfamPF000466.4E-1749102IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-1950110IPR009057Homeodomain-like
PRINTSPR000315.8E-77584IPR000047Helix-turn-helix motif
PROSITE patternPS00027079102IPR017970Homeobox, conserved site
PRINTSPR000315.8E-784100IPR000047Helix-turn-helix motif
PfamPF021835.5E-14104145IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MDRGEYQQQQ FSMPPPALQQ QQELCVPLME EQFLMGARRG GSSSSEMRKR RFTEEQIRSL  60
ESTFHAHHAK LEPREKAELA RELGLQPRQV AIWFQNKRAR WRSKQLEHDF AALRAKYDAL  120
HSRVESLKQE KLTLTTQLHE LSERLREQGG AATASSSSCN GGSEELDVDD KRNVGAGGGC  180
GVDVEPPESC VLGGTAACAT PADVSVDSEC GGYGGGFPES FCATPELWEP WPWPPVEWNA  240
VA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G158900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2244401e-126AY224440.1 Oryza sativa (japonica cultivar-group) isolate 22834 homeodomain leucine zipper protein-like protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580250.11e-130homeobox-leucine zipper protein HOX22
SwissprotQ01IK08e-88HOX22_ORYSI; Homeobox-leucine zipper protein HOX22
SwissprotQ7XUJ58e-88HOX22_ORYSJ; Homeobox-leucine zipper protein HOX22
TrEMBLA0A0Q3P4X71e-128A0A0Q3P4X7_BRADI; Uncharacterized protein
STRINGBRADI5G17170.11e-126(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40273175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.15e-31homeobox 7