PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G158700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 754aa    MW: 81036 Da    PI: 6.2901
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G158700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix98.27e-3187171187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW+++e+laLi++r+em+ ++r++ lk+plWeevs+k++e g++r++k+Ckek+en++k+yk++keg+ +r++++s  +++f++lea
  Brast09G158700.1.p  87 RWPREETLALIRIRSEMDATFRDATLKGPLWEEVSRKLAELGYKRNAKKCKEKFENVHKYYKRTKEGRTGRQDGKS--YRFFSELEA 171
                         8*********************************************************************866665..******985 PP
2trihelix112.42.6e-35493578187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW+k ev+aLi++r +m++r++++  k+plWee+s+ mr+ g++r+pk+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+qlea
  Brast09G158700.1.p 493 RWPKTEVHALIQLRMDMDNRYQENGPKGPLWEEISSGMRRLGYNRNPKRCKEKWENINKYFKKVKESNKRR-PEDSKTCPYFHQLEA 578
                         8********************************************************************97.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.001284146IPR001005SANT/Myb domain
PfamPF138376.4E-2286172No hitNo description
CDDcd122039.16E-3186151No hitNo description
PROSITE profilePS500906.9886144IPR017877Myb-like domain
SMARTSM007170.002490552IPR001005SANT/Myb domain
PROSITE profilePS500907.236492550IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.7E-4492549IPR009057Homeodomain-like
PfamPF138374.6E-23492579No hitNo description
CDDcd122037.16E-31492557No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 754 aa     Download sequence    Send to blast
MQQHQGGGSQ YGAAPPQDMG PFSTPPAAPG PVPLSSRPPP PTQQPTYEEL AAASGAGAGG  60
GFPDDDMLGD SGGNSGGGGG LGASGNRWPR EETLALIRIR SEMDATFRDA TLKGPLWEEV  120
SRKLAELGYK RNAKKCKEKF ENVHKYYKRT KEGRTGRQDG KSYRFFSELE ALHATTAQHH  180
QEQPPPVSGA SGPAPPQLHA FAAPVSAPLP MSTMPPPPGP IQPAPISSAA PAAHVELQQP  240
PPVGLQGLSF PSMSESESDD ESEDDEMTAE TGGGSGSPDG LGKRKHGGGG SSKKMMAFFE  300
GLMKQVIQRQ EEMQRRFLET MEKREAERTA REEAWRKQEV ARLNREQEIL AHERAAAASR  360
DASIIAFLQR VGGGQAVQAP APVVIPMPAP MQVQTTPAAR QPPRQQLPPP PPPPPPQPIP  420
AAPLQQQPPP PQPQHKETAT HQEAVTTPRS APAPAPISGG TSLALVPVGE QQVETHGLGG  480
GGGDHGGAAS SSRWPKTEVH ALIQLRMDMD NRYQENGPKG PLWEEISSGM RRLGYNRNPK  540
RCKEKWENIN KYFKKVKESN KRRPEDSKTC PYFHQLEAIY RKKHNGAGAV SAANAVVASV  600
CAVTTADQQQ TLNRHEIEGK KINDNDKRNN GGVGEGATQT QVPTSNGETT PTTTPPVDFS  660
EKKPEDTVRE LSEQQQREFT TDETDSDDMG DDYTDDGEDG EDDGKMQYRI QFQTPNPVRN  720
PVGTNNAPPP ATTPTNAVPP TSTPSSSFLA MVQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129137KRNAKKCKE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G158700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3589111e-138AK358911.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1085J16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010240190.10.0trihelix transcription factor GTL1 isoform X1
SwissprotQ391174e-72TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLI1J0640.0I1J064_BRADI; Uncharacterized protein
STRINGBRADI5G17150.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.12e-50Trihelix family protein