PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G138900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 379aa    MW: 42029.3 Da    PI: 8.8673
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G138900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM36.31.7e-11531737126
                 NAM   7 FhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpk...kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                         F+P  +++v +yL  + + +   l + i+++d+y + +P  L +   +++++ + ew+fF++r +++ tg r++ra   g  +   ++k  
  Brast09G138900.1.p  53 FDPAPDDIVGRYLPLRRALRCDVLPRQIHDADVYGAhHPAFLAAvypAAANG-RfEWFFFACRGREH-TGARQRRAGP-GAYRLASETKLP 140
                         9***********987766666555567******97549****8534333334.35********9975.89*****855.776665554433 PP

                 NAM  93 lskkgelvglkktLvfy..kgrapkgektdWvmhey 126
                            ++    + + + +y  ++ ++ +++t+W m+ey
  Brast09G138900.1.p 141 ---GHGGSACCQAFRYYedEAGSSAAKETEWRMDEY 173
                         ...3445689999****44334566789*******9 PP
2NAM27.68.4e-0922234414127
                 NAM  14 lvveyLkkkvegkkleleev.ikevdiykvePwdLpk..kvkaeekewyfFskrdkkya..tgkrknr..atksgyWkatgkdkevlskkg 97 
                         lv+ yL+    g++ ++  +  +++ ++ ++P  L     +++++ ewyf ++r k+++  +g++++r   +  g        +  +s k+
  Brast09G138900.1.p 222 LVQLYLESLSLGDPRRCRMHaAHDAFVCAAHPAVLTVpfPAANDRCEWYFAARRPKHKRaaNGDEEERprRAGPGAYVPVRDCRVTKSGKD 312
                         8999*****99999666444389999*********74224444445***999887666544555555521245677887776666666688 PP

                 NAM  98 elvglkktLvfy..kgrapkgektdWvmheyr 127
                          +vg ++++ +   + + ++ ++++W m+ey 
  Brast09G138900.1.p 313 GDVGYRRVFRYRedESTLRRVSRAEWWMDEYG 344
                         89*********94334557788*********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100516.44647195IPR003441NAC domain
PfamPF023659.3E-753173IPR003441NAC domain
SuperFamilySSF1019412.75E-1753194IPR003441NAC domain
PROSITE profilePS5100515.779209372IPR003441NAC domain
SuperFamilySSF1019413.4E-17220372IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MKAPAASSVV PGLEETDDGW VLLPTLAAAA NPRGKPLRPR PRATSAASGH EAFDPAPDDI  60
VGRYLPLRRA LRCDVLPRQI HDADVYGAHH PAFLAAVYPA AANGRFEWFF FACRGREHTG  120
ARQRRAGPGA YRLASETKLP GHGGSACCQA FRYYEDEAGS SAAKETEWRM DEYGDRRGSA  180
AGAAFDMVVC KVYPERGGAV HRRLQLASRP TRRDASNKPQ VLVQLYLESL SLGDPRRCRM  240
HAAHDAFVCA AHPAVLTVPF PAANDRCEWY FAARRPKHKR AANGDEEERP RRAGPGAYVP  300
VRDCRVTKSG KDGDVGYRRV FRYREDESTL RRVSRAEWWM DEYGFGKDFP YGELPGAGDE  360
EDDLVVYKLY MKMAGDRA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G138900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581408.10.0uncharacterized protein LOC100837354
TrEMBLI1IZH70.0I1IZH7_BRADI; Uncharacterized protein
STRINGBRADI5G15230.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147671819