PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G118400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 798aa    MW: 91285.6 Da    PI: 8.4834
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G118400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1682.3e-2154139190
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                         kfY eY++++GF v+k++s++   +g  +++tfvC+k g ++ +      + r+r + +tgCka+++vk ++ +++wev  +eleHnH+++
  Brast09G118400.1.p  54 KFYLEYGYRAGFGVSKRTSHSV--DGVKYRATFVCYKGGIARIKPGL---KARRRLVAKTGCKAMMVVKYNTsENHWEVVFVELEHNHPCN 139
                         6****************99988..9999**************99887...8999*****************99***************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.5E-1954139IPR004330FAR1 DNA binding domain
PfamPF105519.0E-24263356IPR018289MULE transposase domain
PfamPF044342.0E-6544576IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.73544580IPR007527Zinc finger, SWIM-type
SMARTSM005752.0E-4555582IPR006564Zinc finger, PMZ-type
PROSITE patternPS001380702712IPR023828Peptidase S8, subtilisin, Ser-active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 798 aa     Download sequence    Send to blast
MDILHSDPYT RSSLQLEFRD TSMSFENNNA VLVKHEVPNP GVGMTFETVD LAYKFYLEYG  60
YRAGFGVSKR TSHSVDGVKY RATFVCYKGG IARIKPGLKA RRRLVAKTGC KAMMVVKYNT  120
SENHWEVVFV ELEHNHPCNP EMVRFMMCFK DLPDWQREHR PFNAKTRLNP KIHSGRGRPP  180
NQNKDFMARS FSQSNYSIEA AGKCGKLSFA EGDVEALLVF FDKMQAQNSN FFYNWDMDEE  240
GRLKNVCWVD ARSIAAYQHF CDVVCFDTVY LTYQFVIPLV AFLGINHHGQ FVLLGCGLLG  300
DESPETFAWL FKKWLKCMND KAPEAIITTH SRPVVKAVSE VFLNTRHRYN MWHIMKELPE  360
MSERVEDKEA ISLRMKKVVY DTITSADFER EWVEMVNQYN LHDNRWLTTL FEERAKWVPA  420
YVKDTFWAGI STVRRSERLE AFFDGYITPK TTIKTFIEQF DTAMKLRSDR EAYDDFRSFQ  480
QRPQALSGLL FEEQFANAYT INMFQKFQDQ LKQLMNVYCT ELSRNGSIVT FTVTVIGKER  540
KFDYRVMYNS AEKEVWCICR SFQFKGILCS HALAVLKQEL VMLIPSKYIL DRWRKDYKCP  600
EESKETPISP KAGRGTKPEN VREDKVDDLY NHGHQYFADI VEMGATDPDS MEYVLSVMKE  660
AKEKVRKFEE SRKEKRPGES PVCAGKTDGM SLKPTDEGVG SGTSVSTPAS TAVATVDMPS  720
STPMPVPPTM MHVATSSAAV PPGMFLVPMH PHIVFPPFTP GVPTSLPHTP PPPAPTTNEM  780
SVASNSSKKR KKRKGSN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1787791KKRKK
2787793KKRKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G118400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3619440.0AK361944.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2001H06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003579967.10.0protein FAR1-RELATED SEQUENCE 6 isoform X1
RefseqXP_024311986.10.0protein FAR1-RELATED SEQUENCE 6 isoform X1
TrEMBLI1IYU20.0I1IYU2_BRADI; Uncharacterized protein
STRINGBRADI5G13370.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-113FAR1-related sequence 6