PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast09G080600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 240aa MW: 24387.2 Da PI: 8.2057 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.4 | 1.1e-20 | 70 | 119 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f tae+Aa+a++aa+++++g Brast09G080600.1.p 70 KYRGVRRRP-WGKWAAEIRDPQ----KaARVWLGTFATAEDAARAYDAAALRFRG 119 8********.**********93....36************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 6.6E-33 | 69 | 128 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.4E-37 | 70 | 133 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.9E-14 | 70 | 119 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.93E-20 | 70 | 128 | No hit | No description |
PROSITE profile | PS51032 | 25.897 | 70 | 127 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.21E-23 | 70 | 128 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.3E-11 | 71 | 82 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-11 | 93 | 109 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MLPPPTPTPA AGVFSEQALA AETAAIVSAL THVISSGRGP PCPAPPLAMP GAPASTEEPQ 60 GTAEPAPARK YRGVRRRPWG KWAAEIRDPQ KAARVWLGTF ATAEDAARAY DAAALRFRGS 120 RAKLNFPEDA AAATARRATD AAAAAAAAAS KPAALLESQH GDDVMDYLEY SRILEGTRPS 180 DFLLGGGGDG NGRFLGSWSI GTAPASSGSS DSLAGAGPAS APLFQCGGSG WKQSITQGY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-23 | 66 | 127 | 1 | 63 | ATERF1 |
3gcc_A | 1e-23 | 66 | 127 | 1 | 63 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast09G080600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020165912.1 | 2e-76 | ethylene-responsive transcription factor ERF115-like | ||||
TrEMBL | A0A2K2CGC2 | 1e-79 | A0A2K2CGC2_BRADI; Uncharacterized protein | ||||
STRING | Pavir.J15316.1.p | 2e-63 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14299 | 20 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07310.1 | 2e-24 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast09G080600.1.p |