PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G068400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 503aa    MW: 53775.6 Da    PI: 7.619
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G068400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix61.81.6e-19115204186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +Wt+  +  L++a++e+ e+l+rg+l++ +We+v++++     ++g  +s +qCk+k++nl+kryk + +++++  + s+s++p+++q+e
  Brast09G068400.1.p 115 EWTDGAISSLLDAYTERFEQLNRGNLRGRDWEDVAAAVtdgqGKGGAGKSVEQCKNKIDNLKKRYKVECTRNGGPGAASVSHWPWYRQME 204
                         5*************************************9999999***************************999999999********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.0E-21113206No hitNo description
Gene3DG3DSA:3.40.1160.107.5E-72258495IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B32.081260496IPR015963Uridylate kinase, bacteria
SuperFamilySSF536334.84E-53260495IPR001048Aspartate/glutamate/uridylate kinase
PfamPF006961.8E-18263475IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042542.38E-111263496No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MASCDDDFGL LGDDAHPAPQ PSAQPPPPQQ AQTFCFVDAA AAGSGSGPFV PAQEEGNHSS  60
ERGKASQHSK RRRERAEEFS DGGEYCSYIS SSAGGRKGRG AGAGGSSDYR KDREEWTDGA  120
ISSLLDAYTE RFEQLNRGNL RGRDWEDVAA AVTDGQGKGG AGKSVEQCKN KIDNLKKRYK  180
VECTRNGGPG AASVSHWPWY RQMEQIIGNS SSPATSKPLA LTNDEKPRQL QQNANKRYPS  240
SGTGPPTMVP CSRLTPLSNP KWKRVLLKIG GTALAGEAPH NVDPKVIMLI AREVQVACRH  300
GVEVAIVMGA RNIFCGDNWV AATGTDRAST HPVGMMAAVM NAVLLQASLE KIGVETRVQT  360
ALMMQEVAEP YIRRRAMRHL QKGRVVIFGG IGACIGNPLF TTDTAAALRA SEINADVVLK  420
GIAGDDEYGC PPRSSSNALF EHISFRELAA RGISSMDMTA ITCCEENNIP VVIFNMLEPG  480
NISRAICGDQ VGTLVDQSGR IT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1z9d_A2e-612604955238uridylate kinase
1z9d_B2e-612604955238uridylate kinase
1z9d_C2e-612604955238uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G068400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581179.10.0uncharacterized protein LOC100840998 isoform X1
TrEMBLI1IXE00.0I1IXE0_BRADI; Uncharacterized protein
STRINGBRADI5G08980.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19353442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-164Trihelix family protein