PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast09G064200.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 278aa MW: 29759.1 Da PI: 10.1979 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66 | 7.6e-21 | 54 | 103 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f+tae+Aa a+++a+++++g Brast09G064200.2.p 54 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEDAAIAYDEAALRFKG 103 7********.**********94....45***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.2E-33 | 53 | 112 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.86E-30 | 54 | 112 | No hit | No description |
SMART | SM00380 | 4.8E-38 | 54 | 117 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.16E-22 | 54 | 112 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.1E-13 | 54 | 103 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.711 | 54 | 111 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 55 | 66 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 77 | 93 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0071497 | Biological Process | cellular response to freezing | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MVSALEHVIR APPGQQQQQQ GFAAVDAQQQ QQQQQQQIGL AAAAEEQDTG RKRHYRGVRQ 60 RPWGKWAAEI RDPKKAARVW LGTFDTAEDA AIAYDEAALR FKGTKAKLNF PERVQGRTDL 120 GFLVTRGIPH QHQHQLQHYP GSTAMRPPHQ QQTVVPYPDL MRYAQLLQGN PSGRPSGSGA 180 DADASARLMV MGAGSGVMNL PFGPVSPSSS TMTSSSSSSP QILDFTTQQL IRPGPPAAAM 240 STGSAAAQPT SSSTTTASSP PAGAWPYGAE QHRSNKD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-27 | 53 | 115 | 4 | 67 | ATERF1 |
3gcc_A | 2e-27 | 53 | 115 | 4 | 67 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast09G064200.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU957062 | 1e-100 | EU957062.1 Zea mays clone 1581709 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010239814.1 | 1e-108 | ethylene-responsive transcription factor ERF113 | ||||
TrEMBL | I1IX65 | 1e-107 | I1IX65_BRADI; Uncharacterized protein | ||||
STRING | BRADI5G08380.1 | 1e-107 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13330.1 | 4e-32 | related to AP2 6l |
Link Out ? help Back to Top | |
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Phytozome | Brast09G064200.2.p |