PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G044000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 471aa    MW: 54281 Da    PI: 8.8748
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G044000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR153.67.6e-171196190
                FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                        ++Y++ Ak  GF v++++s++  +ng+ +  t++Cs++gk+e+++k+     +++++   gCkak+++ +  dgk++++++ l+HnH+l+
  Brast09G044000.1.p 11 EYYKNXAKAKGFGVTRRSSNRD-DNGQLKYLTLCCSRHGKTESNSKN---MLKPNPTAGLGCKAKVNIVRGPDGKFHLSTVILDHNHTLS 96
                        59***************99998.8889****************9999...999**********************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-141196IPR004330FAR1 DNA binding domain
PfamPF105517.6E-34217311IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MTFDTVNDVR EYYKNXAKAK GFGVTRRSSN RDDNGQLKYL TLCCSRHGKT ESNSKNMLKP  60
NPTAGLGCKA KVNIVRGPDG KFHLSTVILD HNHTLSXHKS RLFRCNKRLD FNVKRRLELN  120
DRAGIRVNKN FNSLVVAADG HENLTFGEKE CRNYLEKTRR LKLGSGDAEA VRDXFMKMQS  180
XNPNFFSLMD VDDESRLKNV FWADARSRAV YDSFGDVITF DTTYLVNKYD MPFASFVGVN  240
HHGXSVLLGC ALLSNEDTXT FVWLFQAWLT CMSNRQPRAI VTXQAKAIQN AVEIVFPDAR  300
YRWCLWHIMK KLPEKLGGYE QYEYIKTAIG KAVYDSLTVT DFEGSWMRML ARYDLVTMNA  360
FVKDVFWAGM STTQRSESMH AFFDGYVNAK TTLKHFVSQY ENALRDKVEK EILADFNSFH  420
STIPCITHFD IEKQFQSVYT NSKFKEFQEE LTHMLYCDRN FIQKEGAIET *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G044000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024310379.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A0Q3EP550.0A0A0Q3EP55_BRADI; Uncharacterized protein
STRINGBRADI2G36810.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.11e-90FAR1-related sequence 4